Sequence Similarity Clusters for the Entities in PDB 1MK2

Entity #1 | Chains: A
SMAD 3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15299
95 % 7 8 6827 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 7 8 6820
70 % 8 10 3778
50 % 8 10 3679
40 % 12 17 1939
30 % 12 17 1851
Entity #2 | Chains: B
Madh-interacting protein protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29240
95 % 2 2 25549 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 24664
70 % 2 2 22360
50 % 2 2 19209
40 % 2 2 16959
30 % 2 2 14216

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures