Sequence Similarity Clusters for the Entities in PDB 1MK2

Entity #1 | Chains: A
SMAD 3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21516
95 % 5 6 7783 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 5 6 7736
70 % 6 8 4102
50 % 6 8 3958
40 % 6 8 3780
30 % 6 8 3521
Entity #2 | Chains: B
Madh-interacting protein protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30141
95 % 2 2 24993 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 24173
70 % 2 2 21995
50 % 2 2 19044
40 % 2 2 16958
30 % 2 2 14550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.