Sequence Similarity Clusters for the Entities in PDB 1MK2

Entity #1 | Chains: A
SMAD 3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16037
95 % 7 8 6603 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 7 8 6595
70 % 8 10 3688
50 % 8 10 3585
40 % 8 10 3453
30 % 8 10 3231
Entity #2 | Chains: B
Madh-interacting protein protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31160
95 % 2 2 25799 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 24926
70 % 2 2 22631
50 % 2 2 19571
40 % 2 2 17410
30 % 2 2 14935

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures