Sequence Similarity Clusters for the Entities in PDB 1MK2

Entity #1 | Chains: A
SMAD 3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20660
95 % 5 6 7439 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 5 6 7403
70 % 6 8 3935
50 % 6 8 3814
40 % 6 8 3653
30 % 6 8 3394
Entity #2 | Chains: B
Madh-interacting protein protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28966
95 % 2 2 24022 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 23254
70 % 2 2 21272
50 % 2 2 18468
40 % 2 2 16449
30 % 2 2 14107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.