Sequence Similarity Clusters for the Entities in PDB 1MJQ

Entity #1 | Chains: E,F,K,L
MUTATED MET CONSENSUS OPERATOR DUPLEX dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,G,H,I,J
METHIONINE REPRESSOR protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 1921
95 % 8 10 1839 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 8 10 1887
70 % 8 10 1912
50 % 8 10 1922
40 % 8 10 1925
30 % 8 10 1855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.