Sequence Similarity Clusters for the Entities in PDB 1MJM

Entity #1 | Chains: C,D
HALF CONSENSUS DNA OPERATOR DUPLEX dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
METHIONINE REPRESSOR protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2130
95 % 6 10 2023 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 6 10 2072
70 % 6 10 2080
50 % 6 10 2084
40 % 6 10 2077
30 % 6 10 1994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures