Sequence Similarity Clusters for the Entities in PDB 1MJM

Entity #1 | Chains: C,D
HALF CONSENSUS DNA OPERATOR DUPLEX dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
METHIONINE REPRESSOR protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2004
95 % 6 10 1908 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 6 10 1953
70 % 6 10 1975
50 % 6 10 1981
40 % 6 10 1975
30 % 6 10 1909

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.