Sequence Similarity Clusters for the Entities in PDB 1MJJ

Entity #1 | Chains: A,L
IMMUNOGLOBULIN MS6-12 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28618
95 % 3 12 3888 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 18 33 995
70 % 593 2474 1
50 % 1223 5011 1
40 % 1223 5011 1
30 % 1384 5941 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN MS6-12 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28455
95 % 2 2 23714 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 7 7999
70 % 592 2424 2
50 % 1224 5011 1
40 % 1224 5011 1
30 % 1385 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures