Sequence Similarity Clusters for the Entities in PDB 1MJJ

Entity #1 | Chains: A,L
IMMUNOGLOBULIN MS6-12 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26946
95 % 3 12 3668 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 17 32 964
70 % 526 2264 1
50 % 1087 4587 1
40 % 1087 4587 1
30 % 1199 5392 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN MS6-12 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26791
95 % 2 2 22349 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 7 7542
70 % 526 2222 2
50 % 1088 4587 1
40 % 1088 4587 1
30 % 1200 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.