Sequence Similarity Clusters for the Entities in PDB 1MJJ

Entity #1 | Chains: A,L
IMMUNOGLOBULIN MS6-12 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28035
95 % 3 12 3809 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 18 33 980
70 % 561 2392 1
50 % 1158 4843 1
40 % 1158 4843 1
30 % 1282 5705 1
Entity #2 | Chains: B,H
IMMUNOGLOBULIN MS6-12 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27877
95 % 2 2 23258 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 7 7836
70 % 560 2342 2
50 % 1159 4843 1
40 % 1159 4843 1
30 % 1283 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures