Sequence Similarity Clusters for the Entities in PDB 1MJI

Entity #1 | Chains: C,D
5S rRNA fragment rna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 146 82
95 % 2 158 91
90 % 2 158 96
70 % 2 182 100
50 % 4 353 57
40 % 4 353 73
30 % 4 353 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures