Sequence Similarity Clusters for the Entities in PDB 1MJI

Entity #1 | Chains: C,D
5S rRNA fragment rna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 157 81
95 % 2 171 88
90 % 2 171 91
70 % 2 195 95
50 % 4 368 54
40 % 4 368 70
30 % 4 368 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures