Sequence Similarity Clusters for the Entities in PDB 1MJG

Entity #1 | Chains: A,B,C,D
CARBON MONOXIDE DEHYDROGENASE BETA SUBUNIT protein, length: 674 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 2792
95 % 4 5 3445 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 5 3501
70 % 4 5 3465
50 % 4 5 3373
40 % 16 19 1482
30 % 16 19 1454
Entity #2 | Chains: M,N,O,P
Carbon monoxide dehydrogenase alpha subunit protein, length: 729 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16862
95 % 4 5 3442 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 1.7
PDBFlex
90 % 4 5 3499
70 % 4 6 3327
50 % 4 6 3236
40 % 4 6 3154
30 % 4 6 2951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures