Sequence Similarity Clusters for the Entities in PDB 1MJE

Entity #1 | Chains: C
5'-D(P*TP*TP*TP*TP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Deleted in split hand/split foot protein 1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 18 2309
95 % 4 18 2963 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.7
PDBFlex
90 % 4 18 3009
70 % 4 18 2983
50 % 4 18 2940
40 % 4 18 2903
30 % 4 18 2714
Entity #3 | Chains: A
breast cancer 2 protein, length: 649 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50117
95 % 1 1 37274
90 % 1 1 35616
70 % 1 1 31751
50 % 1 1 27216
40 % 1 1 24103
30 % 1 1 20561

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.