Sequence Similarity Clusters for the Entities in PDB 1MJE

Entity #1 | Chains: C
5'-D(P*TP*TP*TP*TP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Deleted in split hand/split foot protein 1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 18 2365
95 % 4 18 3014 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.7
PDBFlex
90 % 4 18 3061
70 % 4 18 3029
50 % 4 18 2976
40 % 4 18 2932
30 % 4 18 2743
Entity #3 | Chains: A
breast cancer 2 protein, length: 649 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50751
95 % 1 1 37756
90 % 1 1 36054
70 % 1 1 32104
50 % 1 1 27515
40 % 1 1 24358
30 % 1 1 20778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures