Sequence Similarity Clusters for the Entities in PDB 1MJE

Entity #1 | Chains: C
5'-D(P*TP*TP*TP*TP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Deleted in split hand/split foot protein 1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 22 2103
95 % 4 22 2413 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.7
PDBFlex
90 % 4 22 2488
70 % 4 22 2489
50 % 4 22 2468
40 % 4 22 2419
30 % 4 22 2272
Entity #3 | Chains: A
breast cancer 2 protein, length: 649 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48750
95 % 1 1 39604
90 % 1 1 37748
70 % 3 3 14879
50 % 3 3 13105
40 % 3 3 11764
30 % 3 3 9969

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures