Sequence Similarity Clusters for the Entities in PDB 1MJE

Entity #1 | Chains: C
5'-D(P*TP*TP*TP*TP*TP*T)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Deleted in split hand/split foot protein 1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 2999
95 % 4 14 3741 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.7
PDBFlex
90 % 4 14 3781
70 % 4 14 3729
50 % 4 14 3639
40 % 4 14 3506
30 % 4 14 3282
Entity #3 | Chains: A
breast cancer 2 protein, length: 649 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49411
95 % 1 1 36751
90 % 1 1 35133
70 % 1 1 31378
50 % 1 1 26933
40 % 1 1 23851
30 % 1 1 20335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.