Sequence Similarity Clusters for the Entities in PDB 1MJ8

Entity #1 | Chains: L
IMMUNOGLOBULIN MS6-126 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58889
95 % 2 12 3680 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 4 32 963
70 % 125 2264 1
50 % 261 4587 1
40 % 261 4587 1
30 % 279 5394 1
Entity #2 | Chains: H
IMMUNOGLOBULIN MS6-126 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58168
95 % 1 2 22363 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 7 7555
70 % 128 2222 2
50 % 262 4587 1
40 % 262 4587 1
30 % 280 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.