Sequence Similarity Clusters for the Entities in PDB 1MJ8

Entity #1 | Chains: L
IMMUNOGLOBULIN MS6-126 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 5443
95 % 2 8 5732
90 % 4 33 999
70 % 141 2519 1
50 % 294 5107 1
40 % 378 5756 1
30 % 456 7175 1
Entity #2 | Chains: H
IMMUNOGLOBULIN MS6-126 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59883
95 % 1 2 25742 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 7 8252
70 % 143 2478 2
50 % 295 5107 1
40 % 379 5756 1
30 % 457 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures