Sequence Similarity Clusters for the Entities in PDB 1MJ8

Entity #1 | Chains: L
IMMUNOGLOBULIN MS6-126 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58042
95 % 2 12 3612 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 4 32 953
70 % 103 1822 2
50 % 251 4489 1
40 % 251 4489 1
30 % 269 5290 1
Entity #2 | Chains: H
IMMUNOGLOBULIN MS6-126 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57328
95 % 1 2 22011 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 7 7397
70 % 123 2172 1
50 % 252 4489 1
40 % 252 4489 1
30 % 270 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.