Sequence Similarity Clusters for the Entities in PDB 1MJ8

Entity #1 | Chains: L
IMMUNOGLOBULIN MS6-126 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60425
95 % 2 12 3772
90 % 4 33 970
70 % 132 2362 1
50 % 275 4781 1
40 % 275 4781 1
30 % 293 5635 1
Entity #2 | Chains: H
IMMUNOGLOBULIN MS6-126 protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59685
95 % 1 2 23015 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 7 7756
70 % 134 2311 2
50 % 276 4781 1
40 % 276 4781 1
30 % 294 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures