Sequence Similarity Clusters for the Entities in PDB 1MJ1

Entity #1 | Chains: C,D
Phe-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Q
sarcin-ricin loop of 23SrRNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
helix 69 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Elongation Factor Tu protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 1410
95 % 26 26 1334
90 % 26 26 1358
70 % 74 77 398
50 % 76 79 458
40 % 76 79 497
30 % 142 145 270
Entity #5 | Chains: O
S12 ribosomal protein protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 261 49
95 % 296 300 37
90 % 296 300 41
70 % 466 470 15
50 % 469 473 24
40 % 469 473 39
30 % 469 473 57
Entity #6 | Chains: P
S13 ribosomal protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 294 35
95 % 290 294 42
90 % 290 294 47
70 % 290 294 60
50 % 456 460 30
40 % 456 460 43
30 % 576 580 37
Entity #7 | Chains: L
L11 ribosomal protein protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2551
95 % 15 21 2868
90 % 15 21 2926
70 % 18 24 2498
50 % 232 238 151
40 % 235 241 159
30 % 238 244 176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures