Sequence Similarity Clusters for the Entities in PDB 1MJ1

Entity #1 | Chains: C,D
Phe-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Q
sarcin-ricin loop of 23SrRNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
helix 69 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Elongation Factor Tu protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51928
95 % 1 1 37871
90 % 26 26 1282
70 % 62 65 433
50 % 64 67 496
40 % 64 67 532
30 % 89 92 388
Entity #5 | Chains: O
S12 ribosomal protein protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 217 51
95 % 273 277 40
90 % 273 277 45
70 % 416 420 19
50 % 426 430 24
40 % 426 430 36
30 % 426 430 55
Entity #6 | Chains: P
S13 ribosomal protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 271 33
95 % 267 271 47
90 % 267 271 52
70 % 267 271 62
50 % 413 417 31
40 % 413 417 46
30 % 519 523 34
Entity #7 | Chains: L
L11 ribosomal protein protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 2490
95 % 15 21 2788
90 % 15 21 2829
70 % 18 24 2359
50 % 223 229 135
40 % 226 232 149
30 % 229 235 163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.