Sequence Similarity Clusters for the Entities in PDB 1MJ1

Entity #1 | Chains: C,D
Phe-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Q
sarcin-ricin loop of 23SrRNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
helix 69 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Elongation Factor Tu protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49722
95 % 1 1 36264
90 % 26 26 1205
70 % 56 59 441
50 % 58 61 489
40 % 58 61 530
30 % 83 86 375
Entity #5 | Chains: O
S12 ribosomal protein protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 217 48
95 % 272 276 36
90 % 272 276 40
70 % 398 402 20
50 % 403 407 23
40 % 403 407 33
30 % 403 407 54
Entity #6 | Chains: P
S13 ribosomal protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 266 270 33
95 % 266 270 44
90 % 266 270 48
70 % 266 270 57
50 % 390 394 31
40 % 390 394 43
30 % 491 495 33
Entity #7 | Chains: L
L11 ribosomal protein protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 2356
95 % 15 21 2655
90 % 15 21 2699
70 % 18 24 2242
50 % 209 215 137
40 % 212 218 150
30 % 215 221 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.