Sequence Similarity Clusters for the Entities in PDB 1MJ1

Entity #1 | Chains: C,D
Phe-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Q
sarcin-ricin loop of 23SrRNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
helix 69 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Elongation Factor Tu protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53360
95 % 1 1 38936
90 % 26 26 1313
70 % 62 65 469
50 % 64 67 506
40 % 64 67 550
30 % 90 93 412
Entity #5 | Chains: O
S12 ribosomal protein protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 218 54
95 % 275 279 39
90 % 275 279 44
70 % 426 430 18
50 % 439 443 24
40 % 439 443 38
30 % 439 443 57
Entity #6 | Chains: P
S13 ribosomal protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 273 33
95 % 269 273 47
90 % 269 273 51
70 % 269 273 62
50 % 426 430 32
40 % 426 430 45
30 % 542 546 37
Entity #7 | Chains: L
L11 ribosomal protein protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 2590
95 % 15 21 2878
90 % 15 21 2919
70 % 18 24 2425
50 % 223 229 146
40 % 226 232 155
30 % 229 235 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures