Sequence Similarity Clusters for the Entities in PDB 1MJ1

Entity #1 | Chains: C,D
Phe-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Q
sarcin-ricin loop of 23SrRNA rna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: R
helix 69 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Elongation Factor Tu protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52676
95 % 1 1 38429
90 % 26 26 1295
70 % 62 65 436
50 % 64 67 498
40 % 64 67 538
30 % 90 93 393
Entity #5 | Chains: O
S12 ribosomal protein protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 217 52
95 % 274 278 39
90 % 274 278 44
70 % 422 426 18
50 % 435 439 24
40 % 435 439 36
30 % 435 439 56
Entity #6 | Chains: P
S13 ribosomal protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 268 272 33
95 % 268 272 46
90 % 268 272 51
70 % 268 272 62
50 % 422 426 31
40 % 422 426 44
30 % 531 535 35
Entity #7 | Chains: L
L11 ribosomal protein protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 19 2525
95 % 15 21 2826
90 % 15 21 2867
70 % 18 24 2383
50 % 223 229 141
40 % 226 232 153
30 % 229 235 166

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.