Sequence Similarity Clusters for the Entities in PDB 1MIO

Entity #1 | Chains: A,C
NITROGENASE MOLYBDENUM IRON PROTEIN (ALPHA CHAIN) protein, length: 533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7359
95 % 5 5 7444 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 5 7406
70 % 5 5 7201
50 % 5 5 6646
40 % 5 5 6157
30 % 36 41 606
Entity #2 | Chains: B,D
NITROGENASE MOLYBDENUM IRON PROTEIN (BETA CHAIN) protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7142
95 % 5 5 7259 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 5 7224
70 % 5 5 7026
50 % 5 5 6501
40 % 5 5 6026
30 % 7 8 3139

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures