Sequence Similarity Clusters for the Entities in PDB 1MIO

Entity #1 | Chains: A,C
NITROGENASE MOLYBDENUM IRON PROTEIN (ALPHA CHAIN) protein, length: 533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6068
95 % 5 5 6713 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 5 6693
70 % 5 5 6523
50 % 5 5 6071
40 % 5 5 5677
30 % 5 5 5104
Entity #2 | Chains: B,D
NITROGENASE MOLYBDENUM IRON PROTEIN (BETA CHAIN) protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6110
95 % 5 5 6760 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 5 6740
70 % 5 5 6572
50 % 5 5 6116
40 % 5 5 5715
30 % 6 6 4424

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures