Sequence Similarity Clusters for the Entities in PDB 1MIO

Entity #1 | Chains: A,C
NITROGENASE MOLYBDENUM IRON PROTEIN (ALPHA CHAIN) protein, length: 533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6211
95 % 5 5 6853 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 5 6841
70 % 5 5 6658
50 % 5 5 6196
40 % 5 5 5788
30 % 5 5 5212
Entity #2 | Chains: B,D
NITROGENASE MOLYBDENUM IRON PROTEIN (BETA CHAIN) protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6254
95 % 5 5 6901 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 5 6889
70 % 5 5 6710
50 % 5 5 6239
40 % 5 5 5826
30 % 7 7 3961

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures