Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2699
95 % 142 163 217 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 202 230 139
70 % 589 784 6
50 % 600 800 7
40 % 632 852 9
30 % 708 998 12
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 547 715 2
95 % 558 730 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 564 739 4
70 % 732 1011 4
50 % 746 1035 3
40 % 746 1035 6
30 % 746 1035 10
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16481
95 % 2 4 15340 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3853
70 % 180 363 42
50 % 180 364 83
40 % 180 364 100
30 % 4443 7862 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18851
95 % 5 7 7403 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5647
70 % 188 375 38
50 % 188 376 77
40 % 188 376 92
30 % 4444 7862 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WW1 2 B TCR Beta Chain-TRBV7-8 9606
2 1KGC 2 E T-cell receptor beta chain 9606
3 4WW2 2 B TCR Beta Chain-TRBV7-8 9606
4 3OF6 1 A, B, C T cell receptor beta chain ectodomain 9606
5 1MI5 5 E TcR beta chain extracellular domain 9606
6 3KPS 5 E LC13 TCR beta chain 9606
7 3KPR 5 E, J LC13 TCR beta chain 9606