Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2745
95 % 142 163 219 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 202 230 141
70 % 591 786 6
50 % 602 802 7
40 % 634 854 9
30 % 710 1000 12
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 548 716 2
95 % 559 731 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 565 740 4
70 % 737 1016 4
50 % 751 1040 3
40 % 751 1040 6
30 % 751 1040 10
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16615
95 % 2 4 15465 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3908
70 % 180 363 43
50 % 180 364 84
40 % 180 364 101
30 % 4463 7934 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19002
95 % 5 7 7490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5696
70 % 188 375 40
50 % 188 376 78
40 % 188 376 94
30 % 4464 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KGC 1 D T-cell receptor alpha chain 9606
2 5D2N 1 C, D C25 alpha 9606
3 4Z7U 3 E, G T-CELL RECEPTOR, S13 ALPHA CHAIN 9606
4 4Z7V 3 E, G T-CELL RECEPTOR, L3-12 ALPHA CHAIN 9606
5 1MI5 4 D TcR alpha chain extracellular domain 9606
6 3KPS 4 D LC13 TCR alpha chain 9606
7 3KPR 4 D, I LC13 TCR alpha chain 9606
8 3O6F 3 C, G T-cell receptor alpha chain C region unp residues 1-92 9606
9 4GG6 3 E, G T-CELL RECEPTOR, SP3.4 ALPHA CHAIN EXTRACELLULAR DOMAINS 9606
10 4GG8 1 A, E T-CELL RECEPTOR, SP3.4 ALPHA CHAIN EXTRACELLULAR DOMAINS 9606
11 3T0E 3 C T-cell receptor alpha chain 9606