Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2664
95 % 138 158 217 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 197 224 138
70 % 583 777 6
50 % 594 793 7
40 % 626 845 9
30 % 686 973 12
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 539 706 2
95 % 550 721 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 556 730 4
70 % 710 986 4
50 % 724 1010 3
40 % 724 1010 6
30 % 724 1010 9
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16264
95 % 2 4 15140 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3803
70 % 170 350 32
50 % 170 351 79
40 % 170 351 100
30 % 4345 7653 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18606
95 % 5 7 7310 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5580
70 % 178 360 27
50 % 178 363 73
40 % 178 363 93
30 % 4346 7653 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KGC 1 D T-cell receptor alpha chain 9606
2 5D2N 1 C, D C25 alpha 9606
3 4Z7U 3 E, G T-CELL RECEPTOR, S13 ALPHA CHAIN 9606
4 4Z7V 3 E, G T-CELL RECEPTOR, L3-12 ALPHA CHAIN 9606
5 1MI5 4 D TcR alpha chain extracellular domain 9606
6 3KPS 4 D LC13 TCR alpha chain 9606
7 3KPR 4 D, I LC13 TCR alpha chain 9606
8 3O6F 3 C, G T-cell receptor alpha chain C region unp residues 1-92 9606
9 4GG6 3 E, G T-CELL RECEPTOR, SP3.4 ALPHA CHAIN EXTRACELLULAR DOMAINS 9606
10 4GG8 1 A, E T-CELL RECEPTOR, SP3.4 ALPHA CHAIN EXTRACELLULAR DOMAINS 9606
11 3T0E 3 C T-cell receptor alpha chain 9606