Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2745
95 % 142 163 219 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 202 230 141
70 % 591 786 6
50 % 602 802 7
40 % 634 854 9
30 % 710 1000 12
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 548 716 2
95 % 559 731 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 565 740 4
70 % 737 1016 4
50 % 751 1040 3
40 % 751 1040 6
30 % 751 1040 10
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16615
95 % 2 4 15465 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3908
70 % 180 363 43
50 % 180 364 84
40 % 180 364 101
30 % 4463 7934 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19002
95 % 5 7 7490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5696
70 % 188 375 40
50 % 188 376 78
40 % 188 376 94
30 % 4464 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4U1M 1 A HLA class I histocompatibility antigen, B-42 alpha chain HLA B4201 Allele, Alpha Chain, Carrying RM9 Peptide 9606
2 6MT3 1 A HLA class I histocompatibility antigen, B-18 alpha chain 9606
3 3LN4 1 A HLA class I histocompatibility antigen, B-41 alpha chain B*4103 allele (W95L polymorphic variant) extracellular domains, UNP residues 25-298 9606
4 6MT6 1 A HLA class I histocompatibility antigen, B-37 alpha chain 9606
5 3BWA 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in database 25-300 9606
6 3SPV 1 A HLA class I histocompatibility antigen, B-8 alpha chain UNP residues 25-300 9606
7 4U1J 1 A HLA class I histocompatibility antigen, B-42 alpha chain 9606
8 2BVP 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN 9606
9 4QRT 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
10 4QRS 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
11 6BXP 1 A HLA class I histocompatibility antigen, B-57 alpha chain residues 25-300 9606
12 5WMQ 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
13 5IEH 1 A HLA class I histocompatibility antigen, B-40 alpha chain 9606
14 1XH3 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues 25-300 9606
15 4XXC 1 A HLA class I histocompatibility antigen, B-18 alpha chain UNP residues 25-303 9606
16 3VFN 1 A MHC class I antigen 9606
17 4JQV 1 A HLA class I histocompatibility antigen, B-18 alpha chain extracellular domains (UNP residues 25-302) 9606
18 3VFV 1 A MHC class I antigen 9606
19 2HJL 1 A HLA class I histocompatibility antigen B-57 Residues 25-298 9606
20 4U1H 1 A HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-300 9606
21 1ZHL 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domains alpha 1 9606
22 6MT5 1 A HLA class I histocompatibility antigen, B-37 alpha chain 9606
23 6BXQ 2 B HLA class I histocompatibility antigen, B-57 alpha chain residues 25-300 9606
24 4LCY 1 A, F HLA class I histocompatibility antigen, B-46 alpha chain UNP residues 25-298 9606
25 5WMP 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
26 5XOS 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
27 4QRU 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
28 5WMO 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
29 2FYY 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
30 5WMR 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
31 5VWH 1 A HLA class I histocompatibility antigen, B-58 alpha chain 9606
32 3VRI 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
33 5TXS 1 A HLA class I histocompatibility antigen, B-15 alpha chain 9606
34 4PRE 1 A MHC class I antigen 9606
35 6MT4 1 A HLA class I histocompatibility antigen, B-37 alpha chain 9606
36 3SKO 1 A HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
37 5EO0 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
38 4PRN 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
39 3VFU 1 A MHC class I antigen 9606
40 6BJ8 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
41 2BVO 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
42 1ZHK 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domains alpha 1 9606
43 4QRQ 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
44 3VCL 1 A HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-299 9606
45 4U1N 1 A HLA class I histocompatibility antigen, B-42 alpha chain 9606
46 5VWF 1 A MHC class I antigen 9606
47 5IEK 1 A HLA class I histocompatibility antigen, B-40 alpha chain 9606
48 4U1S 1 A HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-301 9606
49 5T6Y 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
50 5VUE 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
51 2NW3 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues 1-273 9606
52 3X13 1 A HLA class I histocompatibility antigen, B-8 alpha chain HLA-B*08:01 extracellular domain, UNP residues 25-300 9606
53 5T6X 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP resiudes 25-300 9606
54 5VWD 1 A MHC class I antigen 9606
55 1XR9 1 A HLA class I histocompatibility antigen, B-15 alpha chain residues 1-276 9606
56 3BW9 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in database 25-300 9606
57 4O2C 1 A HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
58 3SKM 1 A HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
59 4PRD 1 A MHC class I antigen 9606
60 4PR5 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
61 6D2R 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
62 2CIK 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-35 ALPHA CHAIN RESIDUES 25-300 9606
63 3X12 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-300 9606
64 1ZSD 1 A HLA class I histocompatibility antigen, B-35 alpha chain extracellular domains alpha-1 9606
65 4PRB 1 A MHC class I antigen 9606
66 3VFS 1 A MHC class I antigen 9606
67 3BXN 1 A HLA-B*1402 extracellular domain ectodomain, residues 10-286 9606
68 5WMN 1 A, C HLA class I histocompatibility antigen, B-7 alpha chain 9606
69 3VFR 1 A MHC class I antigen 9606
70 3LKQ 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
71 3LKO 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
72 4PRA 1 A MHC class I antigen 9606
73 5VUF 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
74 3VRJ 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
75 6D2T 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
76 2HJK 1 A HLA class I histocompatibility antigen B-57 Residues 25-298 9606
77 2AXF 1 A HLA class I histocompatibility antigen, B*3508 heavy chain residues 1-276 9606
78 3C9N 1 A HLA class I histocompatibility antigen, B-15 alpha chain UNP residues 25-300 9606
79 3LKP 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
80 3VH8 1 A, D HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*5701, UNP residues 25-299 9606
81 4U1I 1 A HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-301 9606
82 6D29 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
83 3VFO 1 A MHC class I antigen 9606
84 4O2F 1 A, D HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
85 3VFT 1 A MHC class I antigen 9606
86 6BJ3 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
87 5EO1 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
88 3VFM 1 A MHC class I antigen 9606
89 3LN5 1 A HLA class I histocompatibility antigen, B-41 alpha chain B*4104 allele (W95L/R97S/V103L/N114D polymorphic variant) extracellular domains, UNP residues 25-298' 9606
90 3VFP 1 A MHC class I antigen 9606
91 5VVP 1 A MHC class I antigen 9606
92 5U98 1 A, D HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
93 5VWJ 1 A HLA class I histocompatibility antigen, B-58 alpha chain 9606
94 5VUD 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
95 3X14 1 A HLA class I histocompatibility antigen, B-8 alpha chain HLA-B*08:01 extracellular domain 9606
96 2YPK 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
97 4O2E 1 A, D HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
98 6D2B 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
99 2H6P 1 A HLA-B35 Extracellular domains alpha 1 9606
100 3LKS 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
101 5T6W 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
102 3UPR 1 A, C HLA class I histocompatibility antigen, B-57 alpha chain 9606
103 4U1L 1 A, D HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-300 9606
104 5V5L 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
105 4LNR 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
106 1AGD 1 A B*0801 EXTRACELLULAR 9606
107 4U1K 1 A, D HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-300 9606
108 3WUW 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-299 9606
109 5T70 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
110 1A1N 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
111 5T6Z 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
112 2FZ3 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
113 1AGC 1 A B*0801 EXTRACELLULAR 9606
114 2BVQ 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-300 9606
115 2AXG 1 A HLA class I histocompatibility antigen, B*3501 heavy chain residues 1-276 9606
116 1M05 1 A, C HLA class I histocompatibility antigen, B-8 B*0801 alpha chain truncation mutant residues 25-301 9606
117 3LKN 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
118 3LKR 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
119 5IND 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
120 3X11 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-300 9606
121 1AGF 1 A B*0801 EXTRACELLULAR 9606
122 3MV7 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
123 3KWW 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in UNP 25-300 9606
124 1A1O 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
125 1AGE 1 A B*0801 EXTRACELLULAR 9606
126 1XR8 1 A HLA class I histocompatibility antigen, B-15 alpha chain residues (1-276) 9606
127 1AGB 1 A B*0801 EXTRACELLULAR 9606
128 1E27 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN EXTRACELLULAR RESIDUES 25-300 9606
129 3MV8 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
130 5B38 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
131 4JRX 1 A MHC class I antigen UNP RESIDUES 25-300 9606
132 1A1M 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
133 5B39 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
134 3VFW 1 A MHC class I antigen 9606
135 4PRP 1 A MHC class I antigen 9606
136 5IM7 1 A, C HLA-B*58:01 Heavy Chain 9606
137 4PRI 1 A MHC class I antigen 9606
138 2YPL 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
139 2RFX 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
140 1A9E 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 (ALPHA CHAIN) 9606
141 4PRH 1 A MHC class I antigen 9606
142 1MI5 1 A MHC heavy chain extracellular domain 9606
143 1CG9 1 A PROTEIN (HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B* 3501 ALPHA CHAIN) 9606
144 5VZ5 1 A HLA class I histocompatibility antigen, B-15 alpha chain 9606
145 4JRY 1 A MHC class I antigen UNP RESIDUES 25-300 9606
146 5XOT 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
147 2AK4 1 A, F, K, Q HLA-B35 variant Extracellular domains, alpha1,2,3 9606
148 3BVN 1 A, D HLA class I histocompatibility antigen, B*1402 alpha chain 9606
149 5INC 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
150 5V5M 1 A, C HLA class I histocompatibility antigen, B-57 alpha chain 9606
151 1E28 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN EXTRACELLULAR RESIDUES 25-300 9606
152 4QRP 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
153 3FFC 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
154 3MV9 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
155 4QRR 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
156 6MTM 1 A HLA class I histocompatibility antigen, B-37 alpha chain 9606
157 3KXF 1 A, C, I, K HLA class I histocompatibility antigen, B-35 alpha chain residues in UNP 25-300 9606
158 2NX5 1 A, F, K, Q HLA-B35 9606
159 4MJI 1 A, F HLA class I histocompatibility antigen, B-51 alpha chain UNP residues 25-300 9606
160 3SJV 1 A, F, K, P HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
161 1A9B 1 A, D HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 (ALPHA CHAIN) 9606
162 6BJ2 3 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
163 3W39 1 A, D HLA class I histocompatibility antigen, B-52 alpha chain EXTRACELLULAR RESIDUES 25-300 9606