Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2607
95 % 126 146 227 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 185 212 138
70 % 567 757 6
50 % 576 771 7
40 % 608 823 9
30 % 667 950 13
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 524 687 2
95 % 535 702 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 541 711 4
70 % 693 965 4
50 % 705 987 3
40 % 705 987 6
30 % 705 987 9
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15870
95 % 2 4 14764 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3713
70 % 169 346 31
50 % 169 347 79
40 % 169 347 100
30 % 4270 7460 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18184
95 % 5 7 7118 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5440
70 % 177 356 26
50 % 177 359 72
40 % 177 359 93
30 % 4271 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4U1M 1 A HLA class I histocompatibility antigen, B-42 alpha chain HLA B4201 Allele, Alpha Chain, Carrying RM9 Peptide 9606
2 3LN4 1 A HLA class I histocompatibility antigen, B-41 alpha chain B*4103 allele (W95L polymorphic variant) extracellular domains, UNP residues 25-298 9606
3 3BWA 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in database 25-300 9606
4 3SPV 1 A HLA class I histocompatibility antigen, B-8 alpha chain UNP residues 25-300 9606
5 4U1J 1 A HLA class I histocompatibility antigen, B-42 alpha chain 9606
6 2BVP 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN 9606
7 4QRT 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
8 4QRS 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
9 6BXP 1 A HLA class I histocompatibility antigen, B-57 alpha chain residues 25-300 9606
10 5WMQ 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
11 5IEH 1 A HLA class I histocompatibility antigen, B-40 alpha chain 9606
12 1XH3 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues 25-300 9606
13 4XXC 1 A HLA class I histocompatibility antigen, B-18 alpha chain UNP residues 25-303 9606
14 3VFN 1 A MHC class I antigen 9606
15 4JQV 1 A HLA class I histocompatibility antigen, B-18 alpha chain extracellular domains (UNP residues 25-302) 9606
16 3VFV 1 A MHC class I antigen 9606
17 2HJL 1 A HLA class I histocompatibility antigen B-57 Residues 25-298 9606
18 4U1H 1 A HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-300 9606
19 1ZHL 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domains alpha 1 9606
20 6BXQ 2 B HLA class I histocompatibility antigen, B-57 alpha chain residues 25-300 9606
21 4LCY 1 A, F HLA class I histocompatibility antigen, B-46 alpha chain UNP residues 25-298 9606
22 5WMP 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
23 5XOS 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
24 4QRU 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
25 5WMO 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
26 2FYY 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
27 5WMR 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
28 3VRI 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
29 5TXS 1 A HLA class I histocompatibility antigen, B-15 alpha chain 9606
30 4PRE 1 A MHC class I antigen 9606
31 3SKO 1 A HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
32 5EO0 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
33 4PRN 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
34 3VFU 1 A MHC class I antigen 9606
35 6BJ8 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
36 2BVO 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
37 1ZHK 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domains alpha 1 9606
38 4QRQ 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
39 3VCL 1 A HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-299 9606
40 4U1N 1 A HLA class I histocompatibility antigen, B-42 alpha chain 9606
41 5IEK 1 A HLA class I histocompatibility antigen, B-40 alpha chain 9606
42 4U1S 1 A HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-301 9606
43 5T6Y 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
44 2NW3 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues 1-273 9606
45 3X13 1 A HLA class I histocompatibility antigen, B-8 alpha chain HLA-B*08:01 extracellular domain, UNP residues 25-300 9606
46 5T6X 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP resiudes 25-300 9606
47 1XR9 1 A HLA class I histocompatibility antigen, B-15 alpha chain residues 1-276 9606
48 3BW9 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in database 25-300 9606
49 4O2C 1 A HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
50 3SKM 1 A HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
51 4PRD 1 A MHC class I antigen 9606
52 4PR5 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
53 2CIK 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-35 ALPHA CHAIN RESIDUES 25-300 9606
54 3X12 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-300 9606
55 1ZSD 1 A HLA class I histocompatibility antigen, B-35 alpha chain extracellular domains alpha-1 9606
56 4PRB 1 A MHC class I antigen 9606
57 3VFS 1 A MHC class I antigen 9606
58 3BXN 1 A HLA-B*1402 extracellular domain ectodomain, residues 10-286 9606
59 5WMN 1 A, C HLA class I histocompatibility antigen, B-7 alpha chain 9606
60 3VFR 1 A MHC class I antigen 9606
61 3LKQ 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
62 3LKO 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
63 4PRA 1 A MHC class I antigen 9606
64 3VRJ 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
65 2HJK 1 A HLA class I histocompatibility antigen B-57 Residues 25-298 9606
66 2AXF 1 A HLA class I histocompatibility antigen, B*3508 heavy chain residues 1-276 9606
67 3C9N 1 A HLA class I histocompatibility antigen, B-15 alpha chain UNP residues 25-300 9606
68 3LKP 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
69 3VH8 1 A, D HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*5701, UNP residues 25-299 9606
70 4U1I 1 A HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-301 9606
71 3VFO 1 A MHC class I antigen 9606
72 4O2F 1 A, D HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
73 3VFT 1 A MHC class I antigen 9606
74 6BJ3 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
75 5EO1 1 A HLA class I histocompatibility antigen, B-7 alpha chain 9606
76 3VFM 1 A MHC class I antigen 9606
77 3LN5 1 A HLA class I histocompatibility antigen, B-41 alpha chain B*4104 allele (W95L/R97S/V103L/N114D polymorphic variant) extracellular domains, UNP residues 25-298' 9606
78 3VFP 1 A MHC class I antigen 9606
79 5U98 1 A, D HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
80 3X14 1 A HLA class I histocompatibility antigen, B-8 alpha chain HLA-B*08:01 extracellular domain 9606
81 2YPK 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
82 4O2E 1 A, D HLA class I histocompatibility antigen, B-39 alpha chain UNP residues 25-298 9606
83 2H6P 1 A HLA-B35 Extracellular domains alpha 1 9606
84 3LKS 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
85 5T6W 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
86 3UPR 1 A, C HLA class I histocompatibility antigen, B-57 alpha chain 9606
87 4U1L 1 A, D HLA class I histocompatibility antigen, B-81 alpha chain UNP residues 25-300 9606
88 5V5L 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
89 4LNR 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
90 1AGD 1 A B*0801 EXTRACELLULAR 9606
91 4U1K 1 A, D HLA class I histocompatibility antigen, B-7 alpha chain UNP residues 25-300 9606
92 3WUW 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-299 9606
93 5T70 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
94 1A1N 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
95 5T6Z 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
96 2FZ3 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
97 1AGC 1 A B*0801 EXTRACELLULAR 9606
98 2BVQ 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-300 9606
99 2AXG 1 A HLA class I histocompatibility antigen, B*3501 heavy chain residues 1-276 9606
100 1M05 1 A, C HLA class I histocompatibility antigen, B-8 B*0801 alpha chain truncation mutant residues 25-301 9606
101 3LKN 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
102 3LKR 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
103 5IND 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
104 3X11 1 A HLA class I histocompatibility antigen, B-57 alpha chain HLA-B*57:01 extracellular domain, UNP residues 25-300 9606
105 1AGF 1 A B*0801 EXTRACELLULAR 9606
106 3MV7 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
107 3KWW 1 A HLA class I histocompatibility antigen, B-35 alpha chain residues in UNP 25-300 9606
108 1A1O 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
109 1AGE 1 A B*0801 EXTRACELLULAR 9606
110 1XR8 1 A HLA class I histocompatibility antigen, B-15 alpha chain residues (1-276) 9606
111 1AGB 1 A B*0801 EXTRACELLULAR 9606
112 1E27 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN EXTRACELLULAR RESIDUES 25-300 9606
113 3MV8 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
114 5B38 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
115 4JRX 1 A MHC class I antigen UNP RESIDUES 25-300 9606
116 1A1M 1 A HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain 9606
117 5B39 1 A HLA class I histocompatibility antigen, B-57 alpha chain UNP residues 25-300 9606
118 3VFW 1 A MHC class I antigen 9606
119 4PRP 1 A MHC class I antigen 9606
120 5IM7 1 A, C HLA-B*58:01 Heavy Chain 9606
121 4PRI 1 A MHC class I antigen 9606
122 2YPL 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN RESIDUES 25-298 9606
123 2RFX 1 A HLA class I histocompatibility antigen, B-57 alpha chain 9606
124 1A9E 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 (ALPHA CHAIN) 9606
125 4PRH 1 A MHC class I antigen 9606
126 1MI5 1 A MHC heavy chain extracellular domain 9606
127 1CG9 1 A PROTEIN (HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B* 3501 ALPHA CHAIN) 9606
128 5VZ5 1 A HLA class I histocompatibility antigen, B-15 alpha chain 9606
129 4JRY 1 A MHC class I antigen UNP RESIDUES 25-300 9606
130 5XOT 1 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
131 2AK4 1 A, F, K, Q HLA-B35 variant Extracellular domains, alpha1,2,3 9606
132 3BVN 1 A, D HLA class I histocompatibility antigen, B*1402 alpha chain 9606
133 5INC 1 A, C HLA class I histocompatibility antigen, B-58 alpha chain 9606
134 5V5M 1 A, C HLA class I histocompatibility antigen, B-57 alpha chain 9606
135 1E28 1 A HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN EXTRACELLULAR RESIDUES 25-300 9606
136 4QRP 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
137 3FFC 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
138 3MV9 1 A HLA class I histocompatibility antigen, B-35 alpha chain Extracellular domain 9606
139 4QRR 1 A HLA class I histocompatibility antigen, B-35 alpha chain 9606
140 3KXF 1 A, C, I, K HLA class I histocompatibility antigen, B-35 alpha chain residues in UNP 25-300 9606
141 2NX5 1 A, F, K, Q HLA-B35 9606
142 4MJI 1 A, F HLA class I histocompatibility antigen, B-51 alpha chain UNP residues 25-300 9606
143 3SJV 1 A, F, K, P HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
144 1A9B 1 A, D HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 (ALPHA CHAIN) 9606
145 6BJ2 3 A HLA class I histocompatibility antigen, B-35 alpha chain UNP residues 25-300 9606
146 3W39 1 A, D HLA class I histocompatibility antigen, B-52 alpha chain EXTRACELLULAR RESIDUES 25-300 9606