Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 17 2619
95 % 138 158 216 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 197 224 137
70 % 579 771 6
50 % 588 785 7
40 % 620 837 9
30 % 679 964 12
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 536 701 2
95 % 547 716 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 553 725 4
70 % 705 979 4
50 % 717 1001 3
40 % 717 1001 6
30 % 717 1001 9
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15999
95 % 2 4 14886 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 11 3727
70 % 169 348 33
50 % 169 349 79
40 % 169 349 100
30 % 4281 7494 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18317
95 % 5 7 7167 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 9 5470
70 % 177 358 27
50 % 177 361 72
40 % 177 361 94
30 % 4282 7494 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3SPV 1 A HLA class I histocompatibility antigen, B-8 alpha chain UNP residues 25-300 9606
2 4QRT 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
3 4QRS 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
4 4QRU 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
5 5WMR 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
6 4QRQ 1 A HLA class I histocompatibility antigen, B-8 alpha chain 9606
7 3SKM 1 A HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606
8 1AGD 1 A B*0801 EXTRACELLULAR 9606
9 1AGC 1 A B*0801 EXTRACELLULAR 9606
10 1M05 1 A, C HLA class I histocompatibility antigen, B-8 B*0801 alpha chain truncation mutant residues 25-301 9606
11 1AGF 1 A B*0801 EXTRACELLULAR 9606
12 1AGE 1 A B*0801 EXTRACELLULAR 9606
13 1AGB 1 A B*0801 EXTRACELLULAR 9606
14 1MI5 1 A MHC heavy chain extracellular domain 9606
15 4QRP 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
16 3FFC 1 A, F HLA class I histocompatibility antigen, B-8 alpha chain 9606
17 3SJV 1 A, F, K, P HLA class I histocompatibility antigen, B-8 alpha chain Extracellular domain residues 25-301 9606