Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 16 2028
95 % 113 129 218
90 % 166 189 144
70 % 505 664 7
50 % 506 669 7
40 % 541 717 10
30 % 587 834 15
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 451 579 2
95 % 484 622 3
90 % 490 631 4
70 % 623 859 5
50 % 633 879 5
40 % 633 879 9
30 % 633 879 14
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 14563
95 % 2 4 13700
90 % 5 11 3436
70 % 124 254 72
50 % 131 285 82
40 % 131 285 101
30 % 2919 5151 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 19424
95 % 5 7 6561
90 % 5 7 6549
70 % 139 295 43
50 % 139 298 75
40 % 139 298 92
30 % 2920 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.