Sequence Similarity Clusters for the Entities in PDB 1MI5

Entity #1 | Chains: A
MHC heavy chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 16 2113
95 % 116 134 218
90 % 175 200 132
70 % 524 692 6
50 % 525 697 6
40 % 563 748 10
30 % 612 868 15
Entity #2 | Chains: B
beta 2 microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 465 600 2
95 % 499 644 3
90 % 505 653 4
70 % 642 885 4
50 % 654 907 3
40 % 654 907 9
30 % 654 907 14
Entity #3 | Chains: C
Epstein Barr Virus peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
TcR alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 15167
95 % 2 4 14258
90 % 5 11 3554
70 % 124 258 71
50 % 131 289 83
40 % 131 289 102
30 % 3041 5440 1
Entity #5 | Chains: E
TcR beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 20275
95 % 5 7 6876
90 % 5 7 6857
70 % 139 299 43
50 % 139 302 76
40 % 139 302 94
30 % 3042 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.