Sequence Similarity Clusters for the Entities in PDB 1MHZ

Entity #1 | Chains: B
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34952
95 % 2 2 27964 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 26997
70 % 2 2 24426
50 % 22 29 1012
40 % 22 29 1034
30 % 22 29 1023
Entity #2 | Chains: D
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32922
95 % 2 2 26798 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 25885
70 % 22 29 974
50 % 22 29 1006
40 % 22 29 1030
30 % 22 29 1019
Entity #3 | Chains: G
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44587
95 % 2 2 33662 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 32154
70 % 2 2 28658
50 % 22 29 1023
40 % 22 29 1045
30 % 22 29 1032

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures