Sequence Similarity Clusters for the Entities in PDB 1MHZ

Entity #1 | Chains: B
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34485
95 % 2 2 27598 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 26647
70 % 2 2 24121
50 % 22 29 1005
40 % 22 29 1024
30 % 22 29 1007
Entity #2 | Chains: D
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32483
95 % 2 2 26446 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 25550
70 % 22 29 960
50 % 22 29 999
40 % 22 29 1021
30 % 22 29 1004
Entity #3 | Chains: G
METHANE MONOOXYGENASE HYDROXYLASE protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44001
95 % 2 2 33234 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 31756
70 % 2 2 28315
50 % 22 29 1016
40 % 22 29 1035
30 % 22 29 1015

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures