Sequence Similarity Clusters for the Entities in PDB 1MHW

Entity #1 | Chains: A,B
Cathepsin L protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22201
95 % 1 2 19187 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 18680
70 % 1 2 17268
50 % 1 2 14996
40 % 1 2 13346
30 % 1 2 11430
Entity #2 | Chains: C,D
Cathepsin L protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24732
95 % 1 2 21114 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 20522
70 % 1 2 18852
50 % 1 2 16374
40 % 1 2 14605
30 % 1 2 12510
Entity #3 | Chains: E,F,G,H
4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures