Sequence Similarity Clusters for the Entities in PDB 1MHW

Entity #1 | Chains: A,B
Cathepsin L protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21532
95 % 1 2 18610 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 18120
70 % 1 2 16775
50 % 1 2 14595
40 % 1 2 12996
30 % 1 2 11121
Entity #2 | Chains: C,D
Cathepsin L protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24011
95 % 1 2 20478 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 19910
70 % 1 2 18341
50 % 1 2 15955
40 % 1 2 14244
30 % 1 2 12197
Entity #3 | Chains: E,F,G,H
4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.