Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40796
95 % 8 9 4609 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 8 9 4627
70 % 8 9 4547
50 % 12 13 2462
40 % 12 13 2425
30 % 49 56 494
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39147
95 % 1 1 29968 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 147 207 42
70 % 1538 2197 1
50 % 3186 4537 1
40 % 3186 4537 1
30 % 3735 5342 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39872
95 % 1 1 30364 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 479 683 3
70 % 1307 1841 2
50 % 3187 4537 1
40 % 3187 4537 1
30 % 3736 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.