Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39913
95 % 8 9 4500
90 % 8 9 4512
70 % 8 9 4421
50 % 12 13 2402
40 % 12 13 2385
30 % 49 56 485
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38306
95 % 1 1 29311
90 % 143 199 60
70 % 1498 2111 1
50 % 3106 4367 1
40 % 3106 4367 1
30 % 3639 5151 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39010
95 % 1 1 29694
90 % 457 644 3
70 % 1272 1775 2
50 % 3107 4367 1
40 % 3107 4367 1
30 % 3640 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.