Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42039
95 % 8 9 4794 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 8 9 4811
70 % 8 9 4709
50 % 12 15 1829
40 % 12 15 1835
30 % 49 58 476
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40357
95 % 1 1 30880 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 157 224 38
70 % 1584 2282 2
50 % 3287 4717 1
40 % 3287 4717 1
30 % 3873 5571 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41101
95 % 1 1 31289 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 506 721 3
70 % 1621 2329 1
50 % 3288 4717 1
40 % 3288 4717 1
30 % 3874 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.