Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38549
95 % 7 8 5274
90 % 7 8 5293
70 % 7 8 5196
50 % 10 11 3654
40 % 10 11 3505
30 % 47 54 491
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 36980
95 % 1 1 28297
90 % 134 186 60
70 % 1435 2016 1
50 % 2972 4166 1
40 % 2972 4167 1
30 % 3473 4915 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37663
95 % 1 1 28669
90 % 442 618 3
70 % 1231 1710 2
50 % 2973 4166 1
40 % 2973 4167 1
30 % 3474 4915 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.