Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43480
95 % 8 9 4990 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 8 9 5012
70 % 8 9 4900
50 % 12 15 1910
40 % 12 15 1911
30 % 49 58 487
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41739
95 % 1 1 31870 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 183 259 23
70 % 1694 2424 2
50 % 3517 5011 1
40 % 3517 5011 1
30 % 4169 5941 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42510
95 % 1 1 32292 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 559 788 2
70 % 1734 2474 1
50 % 3518 5011 1
40 % 3518 5011 1
30 % 4170 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures