Sequence Similarity Clusters for the Entities in PDB 1MHP

Entity #1 | Chains: A,B
integrin alpha 1, (RESIDUES 169-360) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41375
95 % 8 9 4691
90 % 8 9 4706
70 % 8 9 4627
50 % 12 15 1799
40 % 12 15 1807
30 % 49 58 468
Entity #2 | Chains: H,X
Fab fragment, heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39720
95 % 1 1 30389
90 % 151 214 39
70 % 1554 2232 2
50 % 3218 4607 1
40 % 3218 4607 1
30 % 3775 5422 1
Entity #3 | Chains: L,Y
FAB FRAGMENT, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40448
95 % 1 1 30790
90 % 488 695 3
70 % 1586 2274 1
50 % 3219 4607 1
40 % 3219 4607 1
30 % 3776 5422 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.