Sequence Similarity Clusters for the Entities in PDB 1MHH

Entity #1 | Chains: A,C
Fab, light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4028
95 % 28 62 429 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.7
PDBFlex
90 % 34 83 311
70 % 650 2362 1
50 % 1333 4781 1
40 % 1333 4781 1
30 % 1488 5635 1
Entity #2 | Chains: B,D
Fab, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4036
95 % 2 7 4813 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3825
70 % 642 2311 2
50 % 1334 4781 1
40 % 1334 4781 1
30 % 1489 5635 1
Entity #3 | Chains: E,F
protein L domain C protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48844
95 % 4 7 8120 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 8068
70 % 6 11 3846
50 % 6 11 3738
40 % 6 11 3598
30 % 6 11 3370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures