Sequence Similarity Clusters for the Entities in PDB 1MHH

Entity #1 | Chains: A,C
Fab, light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4703
95 % 24 58 460 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 1.7
PDBFlex
90 % 36 91 270
70 % 711 2553 1
50 % 1461 5180 1
40 % 1715 5834 1
30 % 2098 7269 1
Entity #2 | Chains: B,D
Fab, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4748
95 % 2 7 5070 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 8 18 2357
70 % 704 2511 2
50 % 1462 5180 1
40 % 1716 5834 1
30 % 2099 7269 1
Entity #3 | Chains: E,F
protein L domain C protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39808
95 % 8 11 5536 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 8 11 5568
70 % 10 15 3131
50 % 10 15 3096
40 % 10 15 3024
30 % 10 15 2787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures