Sequence Similarity Clusters for the Entities in PDB 1MHH

Entity #1 | Chains: A,C
Fab, light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3869
95 % 28 62 379 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 1.7
PDBFlex
90 % 34 83 296
70 % 622 2264 1
50 % 1276 4587 1
40 % 1276 4587 1
30 % 1421 5392 1
Entity #2 | Chains: B,D
Fab, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3876
95 % 2 7 4645 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3717
70 % 615 2222 2
50 % 1277 4587 1
40 % 1277 4587 1
30 % 1422 5392 1
Entity #3 | Chains: E,F
protein L domain C protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47567
95 % 4 7 7895 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 7852
70 % 6 11 3731
50 % 6 11 3643
40 % 6 11 3509
30 % 6 11 3285

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.