Sequence Similarity Clusters for the Entities in PDB 1MHH

Entity #1 | Chains: A,C
Fab, light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4109
95 % 28 62 445 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.7
PDBFlex
90 % 34 84 306
70 % 678 2426 1
50 % 1389 4913 1
40 % 1389 4913 1
30 % 1550 5780 1
Entity #2 | Chains: B,D
Fab, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4116
95 % 2 7 4914 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3898
70 % 670 2376 2
50 % 1390 4913 1
40 % 1390 4913 1
30 % 1551 5780 1
Entity #3 | Chains: E,F
protein L domain C protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49602
95 % 4 7 8253 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 8199
70 % 6 11 3917
50 % 6 11 3801
40 % 6 11 3657
30 % 6 11 3423

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures