Sequence Similarity Clusters for the Entities in PDB 1MHH

Entity #1 | Chains: A,C
Fab, light chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3947
95 % 28 62 383 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 1.8
PDBFlex
90 % 34 83 301
70 % 629 2287 1
50 % 1290 4633 1
40 % 1290 4633 1
30 % 1441 5461 1
Entity #2 | Chains: B,D
Fab, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3955
95 % 2 7 4733 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 3 9 3765
70 % 622 2244 2
50 % 1291 4633 1
40 % 1291 4633 1
30 % 1442 5461 1
Entity #3 | Chains: E,F
protein L domain C protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48238
95 % 4 7 8013 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 7969
70 % 6 11 3796
50 % 6 11 3700
40 % 6 11 3561
30 % 6 11 3332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.