Sequence Similarity Clusters for the Entities in PDB 1MHE

Entity #1 | Chains: A,C
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HLA-E protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 1986
95 % 5 11 2275 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 11 2341
70 % 619 740 6
50 % 629 754 7
40 % 663 806 9
30 % 733 930 12
Entity #2 | Chains: B,D
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 561 666 2
95 % 572 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 580 690 4
70 % 758 944 4
50 % 771 966 3
40 % 771 966 6
30 % 771 966 9
Entity #3 | Chains: P,Q
PEPTIDE (VMAPRTVLL) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures