Sequence Similarity Clusters for the Entities in PDB 1MHE

Entity #1 | Chains: A,C
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HLA-E protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 2072
95 % 5 11 2172 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 11 2224
70 % 601 716 6
50 % 603 721 6
40 % 642 772 10
30 % 708 896 15
Entity #2 | Chains: B,D
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 522 616 2
95 % 558 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 566 669 4
70 % 736 912 4
50 % 749 934 3
40 % 749 934 7
30 % 749 934 12
Entity #3 | Chains: P,Q
PEPTIDE (VMAPRTVLL) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.