Sequence Similarity Clusters for the Entities in PDB 1MHC

Entity #1 | Chains: A,D
MHC CLASS I ANTIGEN H2-M3 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37224
95 % 1 1 29047 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 28039
70 % 1 1 25319
50 % 313 721 6
40 % 330 772 10
30 % 356 896 15
Entity #2 | Chains: B,E
MHC CLASS I ANTIGEN H2-M3 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 135 94
95 % 56 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 56 228 65
70 % 378 912 4
50 % 384 934 3
40 % 384 934 7
30 % 384 934 12
Entity #3 | Chains: C,F
NONAPEPTIDE FROM RAT NADH DEHYDROGENASE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.