Sequence Similarity Clusters for the Entities in PDB 1MHC

Entity #1 | Chains: A,D
MHC CLASS I ANTIGEN H2-M3 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37778
95 % 1 1 29471 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 28439
70 % 1 1 25656
50 % 317 732 6
40 % 334 783 10
30 % 360 907 15
Entity #2 | Chains: B,E
MHC CLASS I ANTIGEN H2-M3 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 135 96
95 % 56 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 56 228 67
70 % 380 922 4
50 % 386 944 3
40 % 386 944 7
30 % 386 944 12
Entity #3 | Chains: C,F
NONAPEPTIDE FROM RAT NADH DEHYDROGENASE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures