Sequence Similarity Clusters for the Entities in PDB 1MHC

Entity #1 | Chains: A,D
MHC CLASS I ANTIGEN H2-M3 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31499
95 % 1 1 27319 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 26299
70 % 1 1 23772
50 % 327 754 7
40 % 341 806 9
30 % 367 930 12
Entity #2 | Chains: B,E
MHC CLASS I ANTIGEN H2-M3 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 219 81
95 % 56 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 56 234 66
70 % 387 944 4
50 % 393 966 3
40 % 393 966 6
30 % 393 966 9
Entity #3 | Chains: C,F
NONAPEPTIDE FROM RAT NADH DEHYDROGENASE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures