Sequence Similarity Clusters for the Entities in PDB 1MG3

Entity #1 | Chains: A,E,I,M
Methylamine dehydrogenase, heavy chain protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 7377
95 % 34 37 416
90 % 34 37 439
70 % 34 38 473
50 % 34 38 553
40 % 35 42 553
30 % 35 42 554
Entity #2 | Chains: B,F,J,N
Methylamine dehydrogenase, light chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 37 284
95 % 35 40 403
90 % 35 40 425
70 % 35 41 456
50 % 35 41 531
40 % 60 68 315
30 % 60 68 329
Entity #3 | Chains: C,G,K,O
Amicyanin protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 17 931
95 % 33 35 670
90 % 33 35 700
70 % 33 35 739
50 % 34 36 755
40 % 34 36 784
30 % 34 36 785
Entity #4 | Chains: D,H,L,P
CYTOCHROME C-L protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 2762
95 % 5 5 3467
90 % 5 5 3515
70 % 5 5 3462
50 % 5 5 3395
40 % 5 5 3285
30 % 5 5 3071

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.