Sequence Similarity Clusters for the Entities in PDB 1MG3

Entity #1 | Chains: A,E,I,M
Methylamine dehydrogenase, heavy chain protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7875
95 % 34 37 502 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 34 37 536
70 % 34 38 555
50 % 34 38 602
40 % 35 42 600
30 % 35 42 593
Entity #2 | Chains: B,F,J,N
Methylamine dehydrogenase, light chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 37 352
95 % 35 40 467 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 35 40 505
70 % 35 41 523
50 % 35 41 581
40 % 60 68 350
30 % 60 68 356
Entity #3 | Chains: C,G,K,O
Amicyanin protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 17 1006
95 % 33 35 760 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.6
PDBFlex
90 % 33 35 786
70 % 33 35 835
50 % 34 36 831
40 % 34 36 862
30 % 34 36 847
Entity #4 | Chains: D,H,L,P
CYTOCHROME C-L protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 2936
95 % 5 5 3669 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 5 5 3715
70 % 5 5 3657
50 % 5 5 3578
40 % 5 5 3451
30 % 5 5 3225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.