Sequence Similarity Clusters for the Entities in PDB 1MG3

Entity #1 | Chains: A,E,I,M
Methylamine dehydrogenase, heavy chain protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 8315
95 % 34 37 549 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 34 37 576
70 % 34 38 588
50 % 34 38 629
40 % 35 42 631
30 % 35 42 614
Entity #2 | Chains: B,F,J,N
Methylamine dehydrogenase, light chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 37 401
95 % 35 40 525 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 35 40 553
70 % 35 41 570
50 % 35 41 609
40 % 60 68 394
30 % 60 68 399
Entity #3 | Chains: C,G,K,O
Amicyanin protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 17 1082
95 % 33 35 797 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 33 35 827
70 % 33 35 863
50 % 34 36 866
40 % 34 36 899
30 % 34 36 883
Entity #4 | Chains: D,H,L,P
CYTOCHROME C-L protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 3137
95 % 5 5 3878 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 5 3927
70 % 5 5 3873
50 % 5 5 3764
40 % 5 5 3624
30 % 5 5 3386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures