Sequence Similarity Clusters for the Entities in PDB 1MG2

Entity #1 | Chains: A,E,I,M
Methylamine dehydrogenase, heavy chain protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 7715
95 % 30 37 484
90 % 30 37 520
70 % 30 38 528
50 % 30 38 583
40 % 30 42 587
30 % 30 42 580
Entity #2 | Chains: B,F,J,N
Methylamine dehydrogenase, light chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 37 339
95 % 30 40 457
90 % 30 40 486
70 % 30 41 500
50 % 30 41 563
40 % 55 68 336
30 % 55 68 345
Entity #3 | Chains: C,G,K,O
Amicyanin protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 981
95 % 29 35 747
90 % 29 35 773
70 % 29 35 823
50 % 30 36 812
40 % 30 36 842
30 % 30 36 827
Entity #4 | Chains: D,H,L,P
CYTOCHROME C-L protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 2888
95 % 3 5 3622
90 % 3 5 3665
70 % 3 5 3608
50 % 3 5 3532
40 % 3 5 3414
30 % 3 5 3192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.