Sequence Similarity Clusters for the Entities in PDB 1MG2

Entity #1 | Chains: A,E,I,M
Methylamine dehydrogenase, heavy chain protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 8151
95 % 30 37 540 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 30 37 567
70 % 30 38 582
50 % 30 38 623
40 % 30 42 623
30 % 30 42 608
Entity #2 | Chains: B,F,J,N
Methylamine dehydrogenase, light chain protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 37 393
95 % 30 40 522 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 30 40 548
70 % 30 41 564
50 % 30 41 605
40 % 55 68 387
30 % 55 68 389
Entity #3 | Chains: C,G,K,O
Amicyanin protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 17 1057
95 % 29 35 785 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 29 35 813
70 % 29 35 852
50 % 30 36 855
40 % 30 36 885
30 % 30 36 869
Entity #4 | Chains: D,H,L,P
CYTOCHROME C-L protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 3067
95 % 3 5 3804 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 5 3855
70 % 3 5 3800
50 % 3 5 3700
40 % 3 5 3566
30 % 3 5 3334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures