Sequence Similarity Clusters for the Entities in PDB 1MFQ

Entity #1 | Chains: A
7S RNA of human SRP rna, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
signal recognition particle 19kDa protein protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 10152
95 % 1 8 10178
90 % 1 8 10055
70 % 1 8 9550
50 % 1 8 8638
40 % 1 8 7917
30 % 1 8 6978
Entity #3 | Chains: C
signal recognition particle 54kDa protein protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68883
95 % 1 1 47345
90 % 1 1 44844
70 % 1 1 39302
50 % 1 1 33431
40 % 1 1 29514
30 % 1 1 25001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures