Sequence Similarity Clusters for the Entities in PDB 1MFQ

Entity #1 | Chains: A
7S RNA of human SRP rna, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
signal recognition particle 19kDa protein protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10840
95 % 1 7 10842
90 % 1 7 10693
70 % 1 7 10149
50 % 1 7 9188
40 % 1 7 8405
30 % 1 7 7405
Entity #3 | Chains: C
signal recognition particle 54kDa protein protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67109
95 % 1 1 46216
90 % 1 1 43816
70 % 1 1 38431
50 % 1 1 32712
40 % 1 1 28883
30 % 1 1 24479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures