Sequence Similarity Clusters for the Entities in PDB 1MFQ

Entity #1 | Chains: A
7S RNA of human SRP rna, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
signal recognition particle 19kDa protein protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 11042
95 % 1 7 11025
90 % 1 7 10877
70 % 1 7 10320
50 % 1 7 9340
40 % 1 7 8544
30 % 1 7 7521
Entity #3 | Chains: C
signal recognition particle 54kDa protein protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68108
95 % 1 1 46833
90 % 1 1 44377
70 % 1 1 38906
50 % 1 1 33096
40 % 1 1 29218
30 % 1 1 24750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures