Sequence Similarity Clusters for the Entities in PDB 1MFD

Entity #1 | Chains: L
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27738
95 % 6 39 453
90 % 8 45 393
70 % 573 2327 1
50 % 1178 4713 1
40 % 1178 4713 1
30 % 1309 5567 1
Entity #2 | Chains: H
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21090
95 % 4 4 18374 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 11 4161
70 % 570 2280 2
50 % 1179 4713 1
40 % 1179 4713 1
30 % 1310 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.