Sequence Similarity Clusters for the Entities in PDB 1MFD

Entity #1 | Chains: L
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 20579
95 % 6 39 537 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 8 45 484
70 % 645 2593 1
50 % 1332 5263 1
40 % 1566 5933 1
30 % 1915 7388 1
Entity #2 | Chains: H
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 20878
95 % 4 4 18869 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 11 4392
70 % 644 2550 2
50 % 1333 5263 1
40 % 1567 5933 1
30 % 1916 7388 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures