Sequence Similarity Clusters for the Entities in PDB 1MFC

Entity #1 | Chains: L
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28382
95 % 4 39 492 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 5 45 441
70 % 500 2426 1
50 % 1028 4913 1
40 % 1028 4913 1
30 % 1126 5780 1
Entity #2 | Chains: H
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21630
95 % 3 4 18791 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 11 4262
70 % 500 2376 2
50 % 1029 4913 1
40 % 1029 4913 1
30 % 1127 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures