Sequence Similarity Clusters for the Entities in PDB 1MFB

Entity #1 | Chains: L
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21393
95 % 2 44 403 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 3 50 365
70 % 537 2723 1
50 % 1108 5529 1
40 % 1325 6248 1
30 % 1612 7755 1
Entity #2 | Chains: H
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21691
95 % 1 4 19625 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 11 4598
70 % 539 2682 2
50 % 1109 5529 1
40 % 1326 6248 1
30 % 1613 7755 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1MFB 2 H IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) 10090
2 1MFE 2 H IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) 10090
3 1MFC 2 H IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) 10090
4 1MFD 2 H IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) 10090