Sequence Similarity Clusters for the Entities in PDB 1MFB

Entity #1 | Chains: L
IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20993
95 % 2 39 540 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 3 45 490
70 % 525 2637 1
50 % 1085 5362 1
40 % 1298 6051 1
30 % 1583 7514 1
Entity #2 | Chains: H
IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21299
95 % 1 4 19270 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 11 4480
70 % 528 2600 2
50 % 1086 5362 1
40 % 1299 6051 1
30 % 1584 7514 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures