Sequence Similarity Clusters for the Entities in PDB 1MF8

Entity #1 | Chains: A
CALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT, ALPHA ISOFORM protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 6339
95 % 8 9 5236
90 % 8 9 5262
70 % 9 10 4760
50 % 9 10 4550
40 % 9 10 4319
30 % 67 74 445
Entity #2 | Chains: B
CALCINEURIN B SUBUNIT ISOFORM 1 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 3827
95 % 12 12 4632 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 12 12 4662
70 % 12 12 4574
50 % 13 13 4130
40 % 13 13 3941
30 % 223 384 50
Entity #3 | Chains: C
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 102 112 123
95 % 118 128 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 119 129 159
70 % 175 186 140
50 % 213 225 120
40 % 227 243 137
30 % 234 253 136
Entity #4 | Chains: D
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures