Sequence Similarity Clusters for the Entities in PDB 1MF8

Entity #1 | Chains: A
CALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT, ALPHA ISOFORM protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6936
95 % 8 9 5306 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 1.9
PDBFlex
90 % 8 9 5340
70 % 9 10 4808
50 % 9 10 4594
40 % 9 10 4603
30 % 67 74 464
Entity #2 | Chains: B
CALCINEURIN B SUBUNIT ISOFORM 1 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 4253
95 % 12 12 4575 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 12 12 4614
70 % 12 12 4501
50 % 13 13 3988
40 % 15 16 3148
30 % 256 432 43
Entity #3 | Chains: C
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 80 220
95 % 118 128 152 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 119 129 161
70 % 176 187 145
50 % 219 235 121
40 % 228 244 137
30 % 235 254 142
Entity #4 | Chains: D
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures