Sequence Similarity Clusters for the Entities in PDB 1MF8

Entity #1 | Chains: A
CALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT, ALPHA ISOFORM protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 6247
95 % 8 9 5166
90 % 8 9 5186
70 % 9 10 4692
50 % 9 10 4491
40 % 9 10 4273
30 % 67 74 441
Entity #2 | Chains: B
CALCINEURIN B SUBUNIT ISOFORM 1 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 3771
95 % 12 12 4570 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 12 12 4591
70 % 12 12 4512
50 % 13 13 4077
40 % 13 13 3899
30 % 215 376 51
Entity #3 | Chains: C
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 102 112 122
95 % 116 126 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 117 127 158
70 % 173 184 139
50 % 211 223 117
40 % 225 241 135
30 % 232 251 135
Entity #4 | Chains: D
CYCLOSPORIN A protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures