Sequence Similarity Clusters for the Entities in PDB 1MF2

Entity #1 | Chains: L,M
MONOCLONAL ANTIBODY F11.2.32 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22022
95 % 6 22 603 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 42 105 152
70 % 1390 2479 1
50 % 2836 5021 1
40 % 2836 5021 1
30 % 3291 5951 1
Entity #2 | Chains: H,N
MONOCLONAL ANTIBODY F11.2.32 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21747
95 % 2 2 18893 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 9 2840
70 % 1374 2429 2
50 % 2837 5021 1
40 % 2837 5021 1
30 % 3292 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures