Sequence Similarity Clusters for the Entities in PDB 1MF2

Entity #1 | Chains: L,M
MONOCLONAL ANTIBODY F11.2.32 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20084
95 % 6 22 604 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 42 108 147
70 % 1411 2538 1
50 % 2887 5152 1
40 % 3293 5806 1
30 % 4052 7240 1
Entity #2 | Chains: H,N
MONOCLONAL ANTIBODY F11.2.32 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18679
95 % 2 2 17107 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 9 2881
70 % 1398 2497 2
50 % 2888 5152 1
40 % 3294 5806 1
30 % 4053 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures