Sequence Similarity Clusters for the Entities in PDB 1MF2

Entity #1 | Chains: L,M
MONOCLONAL ANTIBODY F11.2.32 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21638
95 % 6 22 599 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 40 102 154
70 % 1351 2416 1
50 % 2756 4892 1
40 % 2756 4892 1
30 % 3163 5759 1
Entity #2 | Chains: H,N
MONOCLONAL ANTIBODY F11.2.32 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21374
95 % 2 2 18592 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 9 2792
70 % 1335 2366 2
50 % 2757 4892 1
40 % 2757 4892 1
30 % 3164 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures