Sequence Similarity Clusters for the Entities in PDB 1MEX

Entity #1 | Chains: L
Fab 29G12 light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59534
95 % 1 3 12155 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.0
PDBFlex
90 % 1 68 416
70 % 4 2264 1
50 % 7 4587 1
40 % 7 4587 1
30 % 7 5392 1
Entity #2 | Chains: H
Fab 29G12 heavy chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59256
95 % 1 1 41526
90 % 1 2 29084
70 % 4 2222 2
50 % 8 4587 1
40 % 8 4587 1
30 % 8 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.