Sequence Similarity Clusters for the Entities in PDB 1MEX

Entity #1 | Chains: L
Fab 29G12 light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62930
95 % 1 19 1891 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.0
PDBFlex
90 % 1 77 406
70 % 4 2479 1
50 % 7 5021 1
40 % 7 5021 1
30 % 7 5951 1
Entity #2 | Chains: H
Fab 29G12 heavy chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62634
95 % 1 1 43854
90 % 1 2 30736
70 % 4 2429 2
50 % 8 5021 1
40 % 8 5021 1
30 % 8 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures