Sequence Similarity Clusters for the Entities in PDB 1MEL

Entity #1 | Chains: A,B
VH SINGLE-DOMAIN ANTIBODY protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13124
95 % 5 5 10359 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 8428
70 % 272 411 9
50 % 386 613 6
40 % 3286 5806 1
30 % 4043 7240 1
Entity #2 | Chains: L,M
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 656 717 3
95 % 673 734 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 687 751 5
70 % 904 974 7
50 % 910 982 8
40 % 943 1017 10
30 % 943 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures