Sequence Similarity Clusters for the Entities in PDB 1MEL

Entity #1 | Chains: A,B
VH SINGLE-DOMAIN ANTIBODY protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22671
95 % 5 5 9641 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 7883
70 % 251 379 9
50 % 366 576 7
40 % 595 929 5
30 % 665 1056 7
Entity #2 | Chains: L,M
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 601 660 3
95 % 653 713 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 667 730 5
70 % 882 950 7
50 % 888 958 8
40 % 920 992 11
30 % 920 992 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.