Sequence Similarity Clusters for the Entities in PDB 1MEL

Entity #1 | Chains: A,B
VH SINGLE-DOMAIN ANTIBODY protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13457
95 % 5 5 10602 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 8642
70 % 277 424 9
50 % 393 637 6
40 % 3395 6003 1
30 % 4163 7460 1
Entity #2 | Chains: L,M
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 677 739 3
95 % 694 756 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 708 773 5
70 % 926 997 7
50 % 933 1006 8
40 % 966 1041 10
30 % 966 1041 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures