Sequence Similarity Clusters for the Entities in PDB 1MEE

Entity #1 | Chains: A
MESENTERICOPEPTIDASE protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59054
95 % 3 5 10765 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 5 10637
70 % 48 92 495
50 % 67 115 448
40 % 143 229 199
30 % 148 244 197
Entity #2 | Chains: I
EGLIN C protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30972
95 % 7 15 3474 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 15 3542
70 % 7 15 3506
50 % 7 15 3415
40 % 7 15 3303
30 % 29 46 1158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures