Sequence Similarity Clusters for the Entities in PDB 1MEE

Entity #1 | Chains: A
MESENTERICOPEPTIDASE protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57887
95 % 3 5 10497 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 5 10370
70 % 48 92 474
50 % 67 115 437
40 % 142 228 196
30 % 146 242 191
Entity #2 | Chains: I
EGLIN C protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30326
95 % 7 15 3397 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 15 3452
70 % 7 15 3416
50 % 7 15 3325
40 % 7 15 3222
30 % 29 46 1135

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures