Sequence Similarity Clusters for the Entities in PDB 1MEE

Entity #1 | Chains: A
MESENTERICOPEPTIDASE protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55542
95 % 3 4 13720 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 4 13501
70 % 48 90 442
50 % 67 113 421
40 % 137 220 188
30 % 141 234 198
Entity #2 | Chains: I
EGLIN C protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28942
95 % 7 15 3236 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 15 3287
70 % 7 15 3253
50 % 7 15 3181
40 % 7 15 3090
30 % 29 46 1077

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.