Sequence Similarity Clusters for the Entities in PDB 1MEC

Entity #1 | Chains: 1
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55330
95 % 2 2 28189 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 27225
70 % 2 2 24665
50 % 6 6 9697
40 % 6 6 8816
30 % 6 6 7702
Entity #2 | Chains: 2
MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36995
95 % 2 2 28660 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 27679
70 % 7 7 9404
50 % 7 7 8550
40 % 8 8 6910
30 % 174 186 166
Entity #3 | Chains: 3
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57399
95 % 2 2 29338
90 % 2 2 28310
70 % 2 2 25573
50 % 6 6 9876
40 % 34 34 316
30 % 185 197 152
Entity #4 | Chains: 4
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 46772
95 % 2 2 34949
90 % 2 2 33419
70 % 2 2 29804
50 % 3 3 18353
40 % 3 3 16350
30 % 25 25 648

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.