Sequence Similarity Clusters for the Entities in PDB 1MEC

Entity #1 | Chains: 1
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53968
95 % 2 2 27471
90 % 2 2 26537
70 % 2 2 24073
50 % 6 6 9449
40 % 6 6 8586
30 % 6 6 7518
Entity #2 | Chains: 2
MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36050
95 % 2 2 27932
90 % 2 2 26982
70 % 7 7 9146
50 % 7 7 8336
40 % 8 8 6735
30 % 166 178 168
Entity #3 | Chains: 3
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56001
95 % 2 2 28590
90 % 2 2 27595
70 % 2 2 24964
50 % 6 6 9625
40 % 27 27 324
30 % 176 189 151
Entity #4 | Chains: 4
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45600
95 % 2 2 34050
90 % 2 2 32585
70 % 2 2 29123
50 % 3 3 17921
40 % 3 3 15965
30 % 20 20 675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.