Sequence Similarity Clusters for the Entities in PDB 1MEC

Entity #1 | Chains: 1
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56761
95 % 2 2 28991 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 27979
70 % 2 2 25263
50 % 6 6 9971
40 % 6 6 9069
30 % 6 6 7929
Entity #2 | Chains: 2
MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38033
95 % 2 2 29464 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 28435
70 % 7 7 9695
50 % 7 7 8792
40 % 8 8 7099
30 % 182 194 165
Entity #3 | Chains: 3
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58887
95 % 2 2 30155 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 29079
70 % 2 2 26187
50 % 6 6 10157
40 % 36 36 313
30 % 196 208 146
Entity #4 | Chains: 4
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47996
95 % 2 2 35854 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 34257
70 % 2 2 30495
50 % 3 3 18771
40 % 3 3 16717
30 % 25 25 663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.