1MEC

CONFORMATIONAL VARIABILITY OF A PICORNAVIRUS CAPSID: PH-DEPENDENT STRUCTURAL CHANGES OF MENGO VIRUS RELATED TO ITS HOST RECEPTOR ATTACHMENT SITE AND DISASSEMBLY


Sequence Similarity Clusters for the Entities in PDB 1MEC

Entity #1 | Chains: 1
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47990
95 % 2 2 27159 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 26159
70 % 2 2 23657
50 % 6 6 10588
40 % 6 6 9085
30 % 7 7 7076
Entity #2 | Chains: 2
MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41060
95 % 2 2 34548 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 33032
70 % 7 7 10627
50 % 7 7 9391
40 % 8 8 7724
30 % 185 197 181
Entity #3 | Chains: 3
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41059
95 % 2 2 34547 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 33031
70 % 2 2 29473
50 % 6 6 10972
40 % 36 36 372
30 % 198 210 164
Entity #4 | Chains: 4
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41057
95 % 2 2 34546
90 % 2 2 33030
70 % 2 2 29472
50 % 3 3 18789
40 % 3 3 16600
30 % 3 3 13919

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures