Sequence Similarity Clusters for the Entities in PDB 1MEC

Entity #1 | Chains: 1
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57480
95 % 2 2 29340 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 28307
70 % 2 2 25535
50 % 6 6 10081
40 % 6 6 9166
30 % 6 6 8017
Entity #2 | Chains: 2
MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38496
95 % 2 2 29818 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 28771
70 % 7 7 9796
50 % 7 7 8894
40 % 8 8 7185
30 % 182 194 165
Entity #3 | Chains: 3
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59631
95 % 2 2 30519 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 29425
70 % 2 2 26464
50 % 6 6 10271
40 % 36 36 330
30 % 197 209 147
Entity #4 | Chains: 4
MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 48594
95 % 2 2 36307
90 % 2 2 34666
70 % 2 2 30819
50 % 3 3 18957
40 % 3 3 16880
30 % 25 25 670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures