Sequence Similarity Clusters for the Entities in PDB 1MDY

Entity #1 | Chains: E,F,G,H
DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (MYOD BHLH DOMAIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24398
95 % 1 2 20835 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 2 20262
70 % 1 2 18592
50 % 1 2 16160
40 % 1 2 14418
30 % 1 2 12335
Entity #3 | Chains: B,C,D
PROTEIN (MYOD BHLH DOMAIN) protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24398
95 % 2 2 20835 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 2 20262
70 % 2 2 18592
50 % 2 2 16160
40 % 2 2 14418
30 % 2 2 12335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.