Sequence Similarity Clusters for the Entities in PDB 1MDY

Entity #1 | Chains: E,F,G,H
DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (MYOD BHLH DOMAIN) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20180
95 % 1 2 18289 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 1 2 17824
70 % 1 2 16483
50 % 1 2 14395
40 % 1 2 12839
30 % 1 2 10810
Entity #3 | Chains: B,C,D
PROTEIN (MYOD BHLH DOMAIN) protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20180
95 % 2 2 18289 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 2 17824
70 % 2 2 16483
50 % 2 2 14395
40 % 2 2 12839
30 % 2 2 10810

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures