Sequence Similarity Clusters for the Entities in PDB 1MDW

Entity #1 | Chains: A,B
Calpain II, catalytic subunit protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55299
95 % 1 1 41379 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 37704
70 % 8 13 4441
50 % 8 15 3523
40 % 8 15 3555
30 % 8 15 3485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures