Sequence Similarity Clusters for the Entities in PDB 1MDU

Entity #1 | Chains: A,D
gelsolin precursor protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 18 2876
95 % 15 29 1886 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 15 29 1926
70 % 15 29 1944
50 % 15 29 1963
40 % 15 29 1944
30 % 15 29 1852
Entity #2 | Chains: B,E
a-actin protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 144 9
95 % 61 199 9 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 63 205 10
70 % 66 210 13
50 % 66 217 15
40 % 67 236 25
30 % 68 256 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures