Sequence Similarity Clusters for the Entities in PDB 1MDU

Entity #1 | Chains: A,D
gelsolin precursor protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 13 3608
95 % 15 26 2066 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 15 26 2120
70 % 15 26 2118
50 % 15 26 2107
40 % 15 26 2094
30 % 15 26 2015
Entity #2 | Chains: B,E
a-actin protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 123 22
95 % 61 178 15 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 63 183 15
70 % 66 187 23
50 % 66 190 37
40 % 67 209 39
30 % 68 229 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.