Sequence Similarity Clusters for the Entities in PDB 1MDM

Entity #1 | Chains: C
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PAIRED BOX PROTEIN PAX-5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23199
95 % 2 2 19953 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19413
70 % 2 2 17917
50 % 2 2 15549
40 % 2 2 13828
30 % 2 2 11830
Entity #4 | Chains: B
C-ETS-1 PROTEIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1698
95 % 17 19 1668 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 1.5
PDBFlex
90 % 17 19 1704
70 % 18 20 1513
50 % 18 20 1570
40 % 18 20 1588
30 % 18 20 1564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures