Sequence Similarity Clusters for the Entities in PDB 1MDM

Entity #1 | Chains: C
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PAIRED BOX PROTEIN PAX-5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20691
95 % 2 2 17862
90 % 2 2 17404
70 % 2 2 16132
50 % 2 2 14090
40 % 2 2 12555
30 % 2 2 10749
Entity #4 | Chains: B
C-ETS-1 PROTEIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 1462
95 % 17 19 1468
90 % 17 19 1499
70 % 18 20 1362
50 % 18 20 1418
40 % 18 20 1442
30 % 18 20 1414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.