Sequence Similarity Clusters for the Entities in PDB 1MDM

Entity #1 | Chains: C
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PAIRED BOX PROTEIN PAX-5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22760
95 % 2 2 19622 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19102
70 % 2 2 17639
50 % 2 2 15318
40 % 2 2 13630
30 % 2 2 11667
Entity #4 | Chains: B
C-ETS-1 PROTEIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1661
95 % 17 19 1632 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 1.5
PDBFlex
90 % 17 19 1664
70 % 18 20 1484
50 % 18 20 1547
40 % 18 20 1562
30 % 18 20 1531

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures