Sequence Similarity Clusters for the Entities in PDB 1MDM

Entity #1 | Chains: C
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PAIRED BOX PROTEIN PAX-5 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21755
95 % 2 2 18767 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18277
70 % 2 2 16923
50 % 2 2 14741
40 % 2 2 13119
30 % 2 2 11219
Entity #4 | Chains: B
C-ETS-1 PROTEIN protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1570
95 % 17 19 1541 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 1.5
PDBFlex
90 % 17 19 1574
70 % 18 20 1424
50 % 18 20 1485
40 % 18 20 1507
30 % 18 20 1482

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.