Sequence Similarity Clusters for the Entities in PDB 1MDI

Entity #1 | Chains: A
THIOREDOXIN protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 16583
95 % 29 37 918
90 % 29 37 950
70 % 30 38 964
50 % 177 186 134
40 % 193 202 131
30 % 229 238 125
Entity #2 | Chains: B
TARGET SITE IN HUMAN NFKB protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures