Sequence Similarity Clusters for the Entities in PDB 1MDI

Entity #1 | Chains: A
THIOREDOXIN protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 14798
95 % 29 37 801
90 % 29 37 830
70 % 30 38 854
50 % 165 174 121
40 % 180 189 128
30 % 216 225 117
Entity #2 | Chains: B
TARGET SITE IN HUMAN NFKB protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.