Sequence Similarity Clusters for the Entities in PDB 1MDF

Entity #1 | Chains: A
2,3-dihydroxybenzoate-AMP ligase protein, length: 539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26208
95 % 2 3 22232 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 3 21578
70 % 2 3 19800
50 % 2 3 17183
40 % 7 9 4271
30 % 87 105 307

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures