Sequence Similarity Clusters for the Entities in PDB 1MDB

Entity #1 | Chains: A
2,3-dihydroxybenzoate-AMP ligase protein, length: 539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25065
95 % 1 3 21337 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 3 20736
70 % 1 3 19046
50 % 1 3 16560
40 % 5 9 4103
30 % 68 104 290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.