Sequence Similarity Clusters for the Entities in PDB 1MDA

Entity #1 | Chains: H,J
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33868
95 % 1 1 29091 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 27936
70 % 1 1 25171
50 % 4 4 11888
40 % 41 41 662
30 % 41 41 661
Entity #2 | Chains: L,M
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33916
95 % 1 1 29134
90 % 1 1 27974
70 % 41 41 581
50 % 41 41 620
40 % 68 68 417
30 % 68 68 415
Entity #3 | Chains: A,B
AMICYANIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 26 880
95 % 35 35 798 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 35 35 825
70 % 35 35 871
50 % 36 36 882
40 % 36 36 909
30 % 36 36 896

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures