Sequence Similarity Clusters for the Entities in PDB 1MDA

Entity #1 | Chains: H,J
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35102
95 % 1 1 27959 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 26990
70 % 1 1 24418
50 % 4 4 11683
40 % 42 42 630
30 % 42 42 614
Entity #2 | Chains: L,M
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46821
95 % 1 1 35003
90 % 1 1 33427
70 % 41 41 569
50 % 41 41 608
40 % 68 68 393
30 % 68 68 399
Entity #3 | Chains: A,B
AMICYANIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 1078
95 % 35 35 792 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 35 35 821
70 % 35 35 859
50 % 36 36 862
40 % 36 36 895
30 % 36 36 879

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures