Sequence Similarity Clusters for the Entities in PDB 1MDA

Entity #1 | Chains: H,J
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34069
95 % 1 1 27198
90 % 1 1 26275
70 % 1 1 23809
50 % 4 4 11373
40 % 42 42 610
30 % 42 42 601
Entity #2 | Chains: L,M
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45497
95 % 1 1 34071 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 32573
70 % 41 41 546
50 % 41 41 595
40 % 68 68 363
30 % 68 68 367
Entity #3 | Chains: A,B
AMICYANIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 1030
95 % 35 35 768 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.6
PDBFlex
90 % 35 35 795
70 % 35 35 841
50 % 36 36 843
40 % 36 36 874
30 % 36 36 860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.