Sequence Similarity Clusters for the Entities in PDB 1MDA

Entity #1 | Chains: H,J
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32482
95 % 1 1 25932
90 % 1 1 25081
70 % 1 1 22840
50 % 4 4 10884
40 % 42 42 585
30 % 42 42 578
Entity #2 | Chains: L,M
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43583
95 % 1 1 32631
90 % 1 1 31240
70 % 41 41 496
50 % 41 41 560
40 % 68 68 331
30 % 68 68 341
Entity #3 | Chains: A,B
AMICYANIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 977
95 % 35 35 742
90 % 35 35 769
70 % 35 35 814
50 % 36 36 805
40 % 36 36 833
30 % 36 36 821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.