Sequence Similarity Clusters for the Entities in PDB 1MDA

Entity #1 | Chains: H,J
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34547
95 % 1 1 27571 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 26623
70 % 1 1 24098
50 % 4 4 11519
40 % 42 42 623
30 % 42 42 608
Entity #2 | Chains: L,M
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46142
95 % 1 1 34548
90 % 1 1 33003
70 % 41 41 564
50 % 41 41 605
40 % 68 68 387
30 % 68 68 389
Entity #3 | Chains: A,B
AMICYANIN protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 17 1057
95 % 35 35 785 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 35 35 813
70 % 35 35 852
50 % 36 36 855
40 % 36 36 885
30 % 36 36 869

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures