Sequence Similarity Clusters for the Entities in PDB 1MD9

Entity #1 | Chains: A
2,3-dihydroxybenzoate-AMP ligase protein, length: 539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26210
95 % 3 3 23109 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 3 3 22371
70 % 3 3 20406
50 % 10 10 6370
40 % 15 15 3074
30 % 137 137 244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures