Sequence Similarity Clusters for the Entities in PDB 1MD8

Entity #1 | Chains: A
C1R COMPLEMENT SERINE PROTEASE protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56912
95 % 1 2 29051 Flexibility: Medium
Max RMSD: 3.1, Avg RMSD: 3.1
PDBFlex
90 % 1 2 28035
70 % 1 2 25299
50 % 1 2 21713
40 % 2 3 15713
30 % 3 6 3793

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures