Sequence Similarity Clusters for the Entities in PDB 1MD7

Entity #1 | Chains: A
C1R COMPLEMENT SERINE PROTEASE protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60607
95 % 2 2 34699 Flexibility: Medium
Max RMSD: 3.1, Avg RMSD: 3.1
PDBFlex
90 % 2 2 30389
70 % 2 2 27240
50 % 2 2 23296
40 % 4 4 11064
30 % 5 6 3863

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1ELV 1 A COMPLEMENT C1S COMPONENT CCP2-SP CATALYTIC FRAGMENT: ASP363-ASP-673 SEGMENT PRECEDED BY AN ASP-LEU SEQUENCE ADDED AT THE N-TERMINAL END 9606 3.4.21.42 | Details
2 1Q3X 1 A, B Mannan-binding lectin serine protease 2 CCP2-SP 9606 3.4.21.104 | Details
3 1MD8 1 A C1R COMPLEMENT SERINE PROTEASE C-terminal CCP-SP domain 9606 3.4.21.41 | Details
4 4F4O 3 C, F, I, L Haptoglobin 9823
5 1MD7 1 A C1R COMPLEMENT SERINE PROTEASE C-terminal CCP-SP domain 9606 3.4.21.41 | Details
6 4WJG 3 2, C, H, M, R, W Haptoglobin 9606