Sequence Similarity Clusters for the Entities in PDB 1MD2

Entity #1 | Chains: D,E,F,G,H
CHOLERA TOXIN B SUBUNIT protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 254
95 % 12 32 208 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 13 55 78
70 % 13 58 86
50 % 13 58 118
40 % 13 58 141
30 % 13 58 146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures