Sequence Similarity Clusters for the Entities in PDB 1MCW

Entity #1 | Chains: W
IMMUNOGLOBULIN WEIR (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59994
95 % 1 1 42083
90 % 1 1 40085
70 % 1740 2287 1
50 % 3531 4633 1
40 % 3531 4633 1
30 % 4166 5461 1
Entity #2 | Chains: M
IMMUNOGLOBULIN MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 18 1140
95 % 19 20 1399 Flexibility: Medium
Max RMSD: 14.4, Avg RMSD: 7.3
PDBFlex
90 % 57 75 259
70 % 1741 2287 1
50 % 3532 4633 1
40 % 3532 4633 1
30 % 4167 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.