Sequence Similarity Clusters for the Entities in PDB 1MCW

Entity #1 | Chains: W
IMMUNOGLOBULIN WEIR (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60765
95 % 1 1 42638
90 % 1 1 40577
70 % 1798 2362 1
50 % 3645 4781 1
40 % 3645 4781 1
30 % 4304 5635 1
Entity #2 | Chains: M
IMMUNOGLOBULIN MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 18 1169
95 % 19 20 1418 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 67 86 241
70 % 1799 2362 1
50 % 3646 4781 1
40 % 3646 4781 1
30 % 4305 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures