Sequence Similarity Clusters for the Entities in PDB 1MCW

Entity #1 | Chains: W
IMMUNOGLOBULIN WEIR (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59213
95 % 1 1 41525
90 % 1 1 39571
70 % 1728 2264 1
50 % 3507 4587 1
40 % 3507 4587 1
30 % 4125 5394 1
Entity #2 | Chains: M
IMMUNOGLOBULIN MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 18 1125
95 % 19 20 1383 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.3
PDBFlex
90 % 55 73 262
70 % 1729 2264 1
50 % 3508 4587 1
40 % 3508 4587 1
30 % 4126 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.