Sequence Similarity Clusters for the Entities in PDB 1MCW

Entity #1 | Chains: W
IMMUNOGLOBULIN WEIR (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55136
95 % 1 1 45286
90 % 1 1 43083
70 % 1907 2519 1
50 % 3874 5107 1
40 % 4376 5756 1
30 % 5458 7175 1
Entity #2 | Chains: M
IMMUNOGLOBULIN MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 19 1260
95 % 19 20 1452 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 67 86 247
70 % 1908 2519 1
50 % 3875 5107 1
40 % 4377 5756 1
30 % 5459 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures