Sequence Similarity Clusters for the Entities in PDB 1MCQ

Entity #1 | Chains: A,B
IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 1189
95 % 15 20 1451 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 56 88 234
70 % 1450 2416 1
50 % 2949 4892 1
40 % 2949 4892 1
30 % 3401 5759 1
Entity #2 | Chains: P
PEPTIDE N-ACETYL-L-HIS-D-PRO-NH2 protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5WCA 2 L VRC315 27-1C08 Fab Light chain 9606
2 5N4J 1 L LIGHT CHAIN 9606
3 5M6A 1 A, B, C, D Bence-Jones light chain 9606
4 5UKN 2 L DH522UCA Fab fragment light chain 9544
5 4F57 1 L Light chain of Fab of a neutralizing antibody L1 light chain of L1 9606
6 5NHW 2 L anti-human ActRII Bimagrumab Fab light-chain Fab light-chain 9606
7 3U2S 2 B, L PG9 light chain 9606
8 5WCD 2 L VRC315 04-1D02 Fab Light chain 9606
9 5TPP 1 L DH270.5 Fab heavy chain 9606
10 4H8W 3 L FAB LIGHT CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5 9606
11 3TNM 2 B, L Fab light chain of human anti-HIV-1 Env antibody A32 9606
12 5W0D 3 C Lineage K03.12 UCA antibody light chain 9606
13 3GJF 4 K, L Antibody light chain 9606
14 2MCG 1 1, 2 IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
15 1LGV 1 A, B IMMUNOGLOBULIN LAMBDA LIGHT CHAIN 9606
16 3TNN 2 B, D, F, L Fab light chain of ADCC and non-neutralizing anti-HIV-1 antibody N5-i5 9606
17 5GKR 2 B, D lambda, Fab (light chain) 9606
18 5UKP 2 L DH522.1 Fab fragment light chain 9544
19 5UKQ 2 L DH522.2 Fab fragment light chain 9544
20 1DCL 1 A, B MCG A LAMBDA V TYPE LIGHT-CHAIN DIMER 9606
21 1JVK 1 A, B IMMUNOGLOBULIN LAMBDA LIGHT CHAIN 9606
22 3MCG 1 1, 2 IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
23 5WHJ 2 L DX-2507 Fab light chain 9606
24 3U4E 3 B, L PG9 Light Chain 9606
25 5GKS 2 B, D lambda, Fab (light chain) 9606
26 1LHZ 1 A, B IMMUNOGLOBULIN LAMBDA LIGHT CHAIN 9606
27 5M6I 1 B light chain dimer 9606
28 5M6I 2 A light chain dimer 9606
29 5UKO 2 L DH522IA Fab fragment light chain 9544
30 3GHE 1 L Fab 537-10D, light chain 9606
31 4YAQ 2 B, L PG9_N100FY Light Chain 9606
32 5WHK 2 L DX-2507 Fab light chain 9606
33 5U15 2 B, L DH270.UCA3 light chain 9606
34 2OMN 1 A, B Bence Jones KWR Protein - Immunoglobulin Light Chain 9606
35 4NKI 2 L Fab heavy chain 9606
36 5F6I 2 C DH428 Antibody Light Chain 9544
37 3LRS 2 B, D, F, L PG-16 Light Chain Fab 9606
38 3GJE 1 A, L Fab Light Chain 9606
39 4DQO 2 L PG16 Fab Light Chain 9606
40 5WCC 2 B, L VRC 315 02-1F07 Fab Light chain 9606
41 1MCI 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
42 3MUG 1 A, C, E, G, I, K Antibody PG16 Light Chain 9606
43 4F58 1 L, M, N, O Light chain of Fab of a neutralizing antibody L3 9606
44 1MCN 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
45 1MCS 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
46 5TPL 1 L DH270.3 Fab light chain 9606
47 1MCK 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
48 1MCL 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
49 1MCD 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
50 1MCE 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
51 5TQA 2 B, L DH270.6 Fab light chain 9606
52 1MCJ 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
53 1MCF 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
54 1MCC 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
55 1MCB 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
56 1MCQ 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
57 1MCR 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
58 2OLD 1 A, B Bence Jones KWR Protein - Immunoglobulin Light Chain 9606
59 5UKR 2 L DH522.2 Fab fragment light chain 9544
60 5LCV 3 L BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 Fab fragment, light chain 9606
61 1A8J 1 H, L IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG) LIGHT CHAIN DIMER WITH ASPARTAME 9606
62 2JB5 2 L FAB FRAGMENT MOR03268 LIGHT CHAIN 9606
63 5F6H 1 J, L, N, P DH427 Antibody Light Chain 9544
64 5W08 3 H, J, L, N, P, R K03.12 antibody light chain 9606
65 3HAE 4 G, L, N, S Antibody light chain 9606
66 5VK2 4 E, G, L Fab 37.7H light chain 9606
67 2JB6 1 A, L FAB FRAGMENT MOR03268 LIGHT CHAIN 9606
68 1MCH 1 A, B IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) 9606
69 1MCW 2 M IMMUNOGLOBULIN MCG (LIGHT CHAIN) 9606
70 5W4L 4 I, L Antibody N5-i5 light chain 9606
71 2OMB 1 A, B, C, D Bence Jones KWR Protein - Immunoglobulin Light Chain 9606
72 4YC2 3 C, L The antibody A32 Fab light chain. 9606
73 4UT6 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 FAB FRAGMENT, LIGHT CHAIN, RESIDUES -1-213 9606
74 4RFO 4 L N60-i3 Fab light chain 9606
75 3U36 2 B, D, F, L PG9 Fab light chain 9606
76 4YBL 3 C, L A32 antibody light chain 9606
77 3MUH 1 L Antibody PG9 light chain 9606
78 5KJR 4 L N60-I3 FAB LIGHT CHAIN 9606
79 1MCO 1 L IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN) 9606
80 5U0R 2 L DH270.UCA1 light chain 9606
81 4UTB 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 FAB FRAGMENT LIGHT CHAIN, RESIDUES -1-213 9606
82 5T3Z 6 E IOMA Light Chain 9606
83 3MME 2 B, D, L PG16 LIGHT CHAIN FAB 9606
84 5N0A 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 FAB FRAGMENT LIGHT CHAIN, RESIDUES 1-213. The residues numbering is the KABAT scheme numbering. 9606
85 5T3X 6 E IOMA Light Chain 9606
86 5N09 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 - Light chain 9606
87 5F6J 2 A, F DH427 Antibody Light Chain 9544
88 5VJ6 6 L PG9 Fab light chain 9606