Sequence Similarity Clusters for the Entities in PDB 1MCP

Entity #1 | Chains: L
IGA-KAPPA MCPC603 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43857
95 % 9 13 4011 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 71 91 269
70 % 1676 2516 1
50 % 3400 5101 1
40 % 3858 5750 1
30 % 4803 7168 1
Entity #2 | Chains: H
IGA-KAPPA MCPC603 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 43858
95 % 1 2 36651
90 % 1 2 34993
70 % 2 3 21570
50 % 3401 5101 1
40 % 3859 5750 1
30 % 4804 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures