Sequence Similarity Clusters for the Entities in PDB 1MCP

Entity #1 | Chains: L
IGA-KAPPA MCPC603 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40835
95 % 9 13 3808
90 % 65 84 301
70 % 1599 2392 1
50 % 3240 4843 1
40 % 3240 4843 1
30 % 3800 5705 1
Entity #2 | Chains: H
IGA-KAPPA MCPC603 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40662
95 % 1 2 31140
90 % 1 2 29962
70 % 2 3 20693
50 % 3241 4843 1
40 % 3241 4843 1
30 % 3801 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures