Sequence Similarity Clusters for the Entities in PDB 1MCP

Entity #1 | Chains: L
IGA-KAPPA MCPC603 FAB (LIGHT CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39963
95 % 9 13 3717 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.3
PDBFlex
90 % 65 83 301
70 % 1520 2287 1
50 % 3083 4633 1
40 % 3083 4633 1
30 % 3616 5461 1
Entity #2 | Chains: H
IGA-KAPPA MCPC603 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39794
95 % 1 2 30506 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 29358
70 % 2 3 20295
50 % 3084 4633 1
40 % 3084 4633 1
30 % 3617 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.