Sequence Similarity Clusters for the Entities in PDB 1MCO

Entity #1 | Chains: L
IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49462
95 % 20 20 1451 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 77 86 246
70 % 2127 2516 1
50 % 4318 5101 1
40 % 4846 5750 1
30 % 6049 7168 1
Entity #2 | Chains: H
IGG1 MCG INTACT ANTIBODY (HEAVY CHAIN) protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46802
95 % 1 1 38896
90 % 1 1 37094
70 % 6 6 6650
50 % 12 14 2130
40 % 12 20 1252
30 % 12 21 1202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures