Sequence Similarity Clusters for the Entities in PDB 1MCO

Entity #1 | Chains: L
IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59212
95 % 20 20 1383 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.3
PDBFlex
90 % 64 73 262
70 % 1934 2264 1
50 % 3923 4587 1
40 % 3923 4587 1
30 % 4635 5394 1
Entity #2 | Chains: H
IGG1 MCG INTACT ANTIBODY (HEAVY CHAIN) protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51574
95 % 1 1 37712
90 % 1 1 36060
70 % 6 6 6332
50 % 11 11 2932
40 % 11 17 1466
30 % 11 17 1446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.