Sequence Similarity Clusters for the Entities in PDB 1MCO

Entity #1 | Chains: L
IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59912
95 % 20 20 1396 Flexibility: Medium
Max RMSD: 14.4, Avg RMSD: 7.3
PDBFlex
90 % 66 75 259
70 % 1952 2287 1
50 % 3959 4633 1
40 % 3959 4633 1
30 % 4691 5460 1
Entity #2 | Chains: H
IGG1 MCG INTACT ANTIBODY (HEAVY CHAIN) protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52184
95 % 1 1 38168
90 % 1 1 36478
70 % 6 6 6428
50 % 11 11 2960
40 % 11 17 1476
30 % 11 17 1456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.