Sequence Similarity Clusters for the Entities in PDB 1MCO

Entity #1 | Chains: L
IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60764
95 % 20 20 1418 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 77 86 241
70 % 2015 2362 1
50 % 4083 4781 1
40 % 4083 4781 1
30 % 4840 5635 1
Entity #2 | Chains: H
IGG1 MCG INTACT ANTIBODY (HEAVY CHAIN) protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52934
95 % 1 1 38719
90 % 1 1 36983
70 % 6 6 6514
50 % 11 11 3007
40 % 11 17 1497
30 % 11 17 1471

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures